| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,897,768 | T→A | 26.7% | intergenic (+99/‑51) | PP_2551 → / → PP_2552 | LysR family transcriptional regulator/DOPA decarboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,897,768 | 0 | T | A | 26.7% | 18.5 / 7.3 | 15 | intergenic (+99/‑51) | PP_2551/PP_2552 | LysR family transcriptional regulator/DOPA decarboxylase |
| Reads supporting (aligned to +/- strand): ref base T (7/4); new base A (2/2); total (9/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 | |||||||||||
GTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGGCCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGTC > NC_002947/2897627‑2897905 | gTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTAAACCcgcgc < 1:65550/150‑2 (MQ=255) tGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAAcc > 1:92086/1‑150 (MQ=255) gggTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTAAACCcgcgc > 1:266518/1‑119 (MQ=255) gggTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTAAACCcgcgc < 2:266518/120‑2 (MQ=255) cTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCCTCGCGGCTGTAGGCGCGGGTTTATCCGCGa > 2:22604/1‑104 (MQ=255) cTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCCTCGCGGCTGTAGGCGCGGGTTTACCCGCGa < 1:22604/104‑1 (MQ=255) gTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATaa > 1:348606/1‑94 (MQ=255) gTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATaa > 1:94991/1‑94 (MQ=255) gTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATaa < 2:348606/94‑1 (MQ=255) gTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATaa < 2:94991/94‑1 (MQ=255) ggggCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGGCCACCAACTGATCGACCTGAt > 1:344261/1‑150 (MQ=255) gCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAAt > 1:261054/1‑113 (MQ=255) gCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAAt < 2:261054/113‑1 (MQ=255) ttcGCGGCTGTAGGCGCGGGTTTACACGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGGCCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGa > 1:41459/1‑150 (MQ=255) ctttcgcgGGTAAACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGGCCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGTc > 2:187480/5‑150 (MQ=255) | GTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGGCCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGTC > NC_002947/2897627‑2897905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |