| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,319,181 | G→A | 13.2% | intergenic (‑102/+90) | treSA ← / ← PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,319,181 | 0 | G | A | 13.2% | 64.0 / 2.3 | 30 | intergenic (‑102/+90) | treSA/PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (13/13); new base A (2/2); total (15/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 | |||||||||||
CGAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGC > NC_002947/3319043‑3319328 | cGAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGc < 1:106070/150‑1 (MQ=255) tGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTAGCGCTG‑CAc > 1:154125/1‑150 (MQ=255) ggTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCt > 1:202791/1‑150 (MQ=255) tCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGCCGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGgc < 2:281318/150‑1 (MQ=255) gCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGc < 2:202791/150‑1 (MQ=255) ccGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg > 1:455603/1‑150 (MQ=255) aGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCTCGAAGAGGCCGGGCCTGCa > 2:402458/1‑150 (MQ=255) gTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCaca < 2:455603/150‑3 (MQ=255) aTGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCAATGCGGACATACCGACG‑CCAGTTACGATGTGTGCTGTGGGATCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGc > 1:367670/1‑150 (MQ=255) gatctcGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCGG‑CACCGGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGc < 1:330196/145‑1 (MQ=255) gTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGGTCCCACAGGCGGCCGTACCGCTGAAGATTTGCGCTG‑CACTTGTGGGAAAGGGCGCGGCCGCGAAGAGGCCGGGCCTGCGAAGGCAGGATCCGCGGCGGGCCggatc > 2:330196/1‑146 (MQ=255) tCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCACACAGGCGGACATACCGCCGAAGATTTGGGCTG‑CCCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACtgctgc > 2:389713/1‑150 (MQ=255) gggTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGa < 2:231080/43‑1 (MQ=255) gggTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGa > 1:231080/1‑43 (MQ=255) gtTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTgg > 2:125051/1‑71 (MQ=255) gtTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTgg < 1:125051/71‑1 (MQ=255) gtTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGaaa < 1:102495/150‑1 (MQ=255) ttGGTTTCTTCGCGGGCTTGCCCACTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCgg > 1:440556/1‑123 (MQ=255) ttGGTTTCTTCGCGGGCTTGCCCACTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCgg < 2:440556/123‑1 (MQ=255) ttGGTTTCTTCGCGGGCTTGCCCACTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCgg > 1:440555/1‑123 (MQ=255) ttGGTTTCTTCGCGGGCTTGCCCACTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCgg < 2:440555/123‑1 (MQ=255) tcttcGCGGGCGCGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTgg < 1:503768/64‑1 (MQ=37) tcttcGCGGGCGCGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTgg > 2:503768/1‑64 (MQ=37) ttcGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGGGGAGGGCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg < 1:177932/150‑1 (MQ=255) ttcGCGGGCTTGCCCGCGCCCACAGGCGGACAGACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGCCAACTGCTGCGGTGCCAGAAACGCATCATg > 2:6802/1‑150 (MQ=255) gcgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCTCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 1:402458/150‑1 (MQ=255) gcgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 2:327280/150‑1 (MQ=255) gcgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTCCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 2:367670/150‑1 (MQ=255) cccGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgcg > 1:172867/1‑150 (MQ=255) ccGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTTCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgcgc > 2:119558/1‑150 (MQ=255) | CGAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTG‑CACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGC > NC_002947/3319043‑3319328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |