| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,652,217 | G→C | 20.5% | R20R (CGG→CGC) | PP_3218 → | NtaA/SnaA/SoxA family monooxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,652,217 | 0 | G | C | 20.5% | 45.2 / 3.2 | 24 | R20R (CGG→CGC) | PP_3218 | NtaA/SnaA/SoxA family monooxygenase |
| Reads supporting (aligned to +/- strand): ref base G (12/6); new base C (2/3); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTCAACGCAGCATTCGGCAATAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATGTTCATCGTCGACAGCCAGTTC > NC_002947/3652074‑3652343 | ttCAACGCAGCATTCGGCAATAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAAc > 1:492411/1‑150 (MQ=255)ttCAACGCAGCATTCGGCAATAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGCCGGCCCGGGCCGCcac < 1:229667/147‑1 (MQ=255)ttCAACGCAGCATTCGGCAATAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGCCGGCCCGGGCCGCcac > 2:229667/1‑147 (MQ=255) gcaTTCGGCAATAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTc < 2:502499/150‑1 (MQ=255) ggCAATAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGAcccc > 1:463024/1‑150 (MQ=255) aaTAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGaa < 2:463024/150‑1 (MQ=255) aTAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAAc < 2:468495/150‑1 (MQ=255) ccGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGCCGGCCCGGGCCGCcactgc < 1:394070/108‑4 (MQ=255) ccGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGCCGGCCCGGGCCGCcactgc > 2:394070/1‑105 (MQ=255) gcggcATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGa < 1:296640/150‑1 (MQ=255) ttCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTa > 1:122336/1‑150 (MQ=255) aGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTAcat > 1:131874/1‑150 (MQ=255) cAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCAATCGCCCGGCAgg > 1:460176/1‑150 (MQ=255) ccATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCcg > 2:346785/1‑150 (MQ=255) cAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCGGTGGCGAACAGGGCGGTGACTACCTTGGTCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGACCATCGACTGGTCCATCGCCATCGTCCGGCTGGCGGAAGCCGTgttggt < 2:492411/150‑3 (MQ=255) gACAGATCAAACTTGGAGCCCTGACCATTGGCAGAGGAGGCCCGGGCAGGAACAATCTTTGGCTTTACCTCGACCTGACCGCCGACGCCAGCGAAAACATCGACTGGTACATCGCAATCGCCCGGAAGGCGGAAACCGCcttgttgcaaa > 2:58612/1‑145 (MQ=255) aTCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGATTGTTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGGTg > 1:367818/1‑150 (MQ=255) aTCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATg > 2:373311/1‑150 (MQ=255) aCTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATGTTCAt < 2:460176/150‑1 (MQ=255) atctgcCCTGACCATGGGCAGTGGCGGCCCGGGCAGCCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATGTTCAtcgt < 2:295285/146‑1 (MQ=255) cccTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTTTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATGTTCAtcgtcagat > 1:295285/1‑146 (MQ=255) cTGAGCAGGGGCAGTGGCGGCCGGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGCCCTGATGATCATTGTCGACAGc < 2:21049/150‑1 (MQ=255) cATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATGTTCATCGTCGACAGCCAGtt > 2:461452/1‑150 (MQ=255) aTGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATGTTCATCGTCGACAGCCAGTtc > 1:15704/1‑150 (MQ=255) | TTCAACGCAGCATTCGGCAATAACTAGGCCGCTGCGCAAGGACCGCGGCGGCATTCAGATATGGACCATCCAACAGGAACTCCCATGAGCAAACGACAGATCAAACTTGGCGCCCTGACCATGGGCAGTGGCGGCCCGGGCCGGCACAACCTGTGGCTCGACCCCGAACTGCCCGCCGACGCCAGCGTGAACATCGACTGGTACATCGCCATCGCCCGGCAGGCGGAAGCCGCGTTGTTCGACCTGATGTTCATCGTCGACAGCCAGTTC > NC_002947/3652074‑3652343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |