| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,700,170 | C→A | 16.0% | G106C (GGC→TGC) | ybhP‑I ← | phosphohydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,700,170 | 0 | C | A | 16.0% | 59.4 / 2.8 | 25 | G106C (GGC→TGC) | ybhP‑I | phosphohydrolase |
| Reads supporting (aligned to +/- strand): ref base C (10/11); new base A (2/2); total (12/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-01 | |||||||||||
CCGCATGCACCTCGTCATGGCCCGGCACCTCCAGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGTGACTGCCGTGCACCTCTTGCAAGAA > NC_002947/3700041‑3700317 | ccGCATGCACCTCGTCATGGCCCGGCACCTCCAGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATaca > 1:480415/1‑150 (MQ=255) cTCGTCATGGCCCGGCACCTCCAGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCg < 1:7787/150‑1 (MQ=255) ccGGCACCTCCAGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCaa > 1:422765/1‑150 (MQ=255) aGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATa < 2:56555/116‑1 (MQ=255) aGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATa > 1:56555/1‑116 (MQ=255) aGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCcac < 1:441412/150‑1 (MQ=255) tGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCg < 2:23222/150‑1 (MQ=255) cagcagGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGc < 1:352777/150‑1 (MQ=255) cACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTCCCGTGCTCCCCACGTGGCTCGACAGCATTGGGGCCAGAGGCAAACCGCGGCCACCTGGTGTCGGCCAGaaccg > 2:30629/1‑147 (MQ=255) ttCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTg > 1:250026/1‑150 (MQ=255) aTTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTgcgg > 1:67783/1‑150 (MQ=255) ggggAATTTCGACAACAGCGCGTTGCAGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTgg < 1:46370/148‑1 (MQ=255) ggggAATTTCGACAACAGCGCGTTGCAGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTgg < 1:46489/148‑1 (MQ=255) ggggAATTTCGACAACAGCGCGTTGCAGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTgg > 2:46489/1‑148 (MQ=255) ggggAATTTCGACAACAGCGCGTTGCAGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTgg > 2:46370/1‑148 (MQ=255) ggAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGtgc > 1:224861/1‑140 (MQ=255) ggAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGtgc < 2:224861/140‑1 (MQ=255) gACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGTGACTGCCGTGc > 2:406898/1‑150 (MQ=255) acaacaGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGTGACTGCCGTGCa < 1:374299/150‑1 (MQ=255) aGCGCGTTGCCGTGATCGCCATGTGGATACACAGCAtt < 1:451117/38‑1 (MQ=255) aGCGCGTTGCCGTGATCGCCATGTGGATACACAGCAtt > 2:451117/1‑38 (MQ=255) gcgTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGTGACTGCCGTGCACCTCTTGc < 1:406898/150‑1 (MQ=255) ttGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGt > 2:131263/1‑127 (MQ=255) ttGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGt < 1:131263/127‑1 (MQ=255) gCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGTGACTGCCGTGCACCTCTTGCAAGaa < 1:30629/150‑1 (MQ=255) | CCGCATGCACCTCGTCATGGCCCGGCACCTCCAGCTGGCAATGCAGCAGGCCACGCTGTTCATTGCCCTGCACCGAAACATCCAGGTTGTTGAAGCGCCTGATGGGGAATTTCGACAACAGCGCGTTGCCGTGATCGCCATGTGGATACACAGCATTGCGGCCATAGGCAAACTGCGGCCACATGCTGTCGGCCAGAAACTCGTACTGCGGCGTTTCGGGCCAGGCAGGGTGGCGCAAGGCGTGCTGCTGGTGACTGCCGTGCACCTCTTGCAAGAA > NC_002947/3700041‑3700317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |