Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,080,964 | A→T | 16.9% | intergenic (‑144/+19) | amaC ← / ← dpkA | D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,080,964 | 0 | A | T | 16.9% | 53.4 / 4.0 | 23 | intergenic (‑144/+19) | amaC/dpkA | D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase |
Reads supporting (aligned to +/- strand): ref base A (10/9); new base T (2/2); total (12/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
CAGCTCCTTGGATCAGGACGGTACGGAAAGTCAGTGTTGAGCATACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTGCTCGGTCACCGCCACCCCCTCCTCCTCGGCCACCTCGCGCTCACGGTAGCGCCGCTCGCCCGGCATGCGCGTCAGCCCCACCGCC > NC_002947/4080827‑4081103 | cAGCTCCTTGGATCAGGACGGTACGGAAAGTCAGTGTTGAGCATACCCGGAGTGCGGGTTCAGGAACACCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGAATCAGGGCTGGCTTCTTCGCGGGTTTACCCGCGaaaaa < 1:40773/150‑4 (MQ=255) aaaGTCAGTGTTGAGCATACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCa > 1:95798/1‑150 (MQ=255) tGAGCATACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAAc < 2:416489/150‑1 (MQ=255) aGCATACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCttt < 2:304298/135‑1 (MQ=255) aGCATACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCttt > 1:304298/1‑135 (MQ=255) gCATACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTcc > 2:500661/1‑150 (MQ=255) aTACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAg > 1:148312/1‑106 (MQ=255) aTACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAg < 2:148312/106‑1 (MQ=255) aTACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTg > 1:277263/1‑150 (MQ=255) aCCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCAGCGAAGGGGCCAAAGCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTGCt > 1:103410/1‑150 (MQ=255) gggTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCcgc < 1:98026/89‑1 (MQ=255) gggTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCcgc > 2:98026/1‑89 (MQ=255) aGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAag > 1:499857/1‑104 (MQ=255) aGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAag < 2:499857/104‑1 (MQ=255) aGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAg < 2:30399/116‑1 (MQ=255) aGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAg > 1:30399/1‑116 (MQ=255) aCATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTGCTCGGTCACCGCCACCCcctcct < 2:277263/150‑1 (MQ=255) cGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTGCTCGGTCACCGCCACCCCCTCCTCCTCGGCCACCTCGCGCTCACGGTAGCGCCGCTCGCCCGGCAt < 2:95798/150‑1 (MQ=255) ctggctTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAAc < 1:43221/68‑1 (MQ=255) ctggctTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAAc > 2:43221/1‑68 (MQ=255) ttCGCGGGTTTACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTGCTCGGTCACCGCCACCCCCTCCTCCTCGGCCACCTCGCGCTCACGGTAGCGCCGCTCGCCCGGCATGCGCGTCAGTCCCACCGcc > 2:397427/1‑150 (MQ=255) ttCGCGGGTTTACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTGCTCGGTCACCGCCACCCCCTCCTCCTCAGCCACCTCgcgc < 2:343136/105‑1 (MQ=255) ttCGCGGGTTTACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTATTTCAGGCCTTTCAACTCCTGCTCGGTCACCGCCACCCCCTCCTCCTCAGCCACCTCgcgc > 1:343136/1‑105 (MQ=255) | CAGCTCCTTGGATCAGGACGGTACGGAAAGTCAGTGTTGAGCATACCCGGAGTGCGGGTTCAGGAACATCCACTATTGTGCAAGGTTGTCTATGCAACATTGCATGACCGGGATGAGGGCTGGCTTTTTCGCGGGTAAACCCGCGAAGGGGCCAAATCAGCCAAGCAGCTCTTTCAGGCCTTTCAACTCCTGCTCGGTCACCGCCACCCCCTCCTCCTCGGCCACCTCGCGCTCACGGTAGCGCCGCTCGCCCGGCATGCGCGTCAGCCCCACCGCC > NC_002947/4080827‑4081103 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |