Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,550,709 | T→A | 20.0% | S301S (TCT→TCA) | PP_4881 → | iron ABC transporter substrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,550,709 | 0 | T | A | 20.0% | 36.7 / 6.3 | 20 | S301S (TCT→TCA) | PP_4881 | iron ABC transporter substrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base T (7/9); new base A (2/2); total (9/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 |
ATCTCCGGCGCAGGCGTGGTCAAGGCCAGCAAACACCCGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCGGCCTGCTCTGATGACTGCCGCCCTGTCCGAACCGGTGCCGG > NC_002947/5550569‑5550850 | aTCTCCGGCGCAGGCGTGGTCAAGGCCAGCAAACACCCGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGc < 1:254635/150‑1 (MQ=255) cAGGCGTGGTCAAGGCCAGCAAACACCCGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGt < 1:227801/150‑1 (MQ=255) aGGCGTGGTCAAGGCCAGCAAACACCCGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCAGGCCGCGGTCAGAAAccatg < 1:77219/150‑4 (MQ=255) gCCAGCAAACACCCGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCt > 2:214036/1‑117 (MQ=255) gCCAGCAAACACCCGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCt < 1:214036/117‑1 (MQ=255) ccGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGAtc > 1:156034/1‑150 (MQ=255) cGAAAGAAGCCCAGGCCCTGCTCAACTGTATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCAGGCCGCGGTCAGAAAccatgcc < 2:364619/126‑6 (MQ=255) cGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCAGGCCGCGGTCAGAAAccatgcc > 1:364619/1‑121 (MQ=255) ccTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCTCTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTggg < 2:270878/150‑1 (MQ=255) aaCTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGcc < 2:425308/150‑1 (MQ=255) aaCTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTAGCCAGCTGACCTGGGCAATGcc > 2:237680/1‑150 (MQ=255) cTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGATACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGa < 1:183174/150‑1 (MQ=255) cTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGa < 1:368875/150‑1 (MQ=255) ggATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAgg > 2:446478/1‑150 (MQ=255) cAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCAt > 2:289625/1‑150 (MQ=255) gATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCgg < 2:156034/150‑1 (MQ=255) aTCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGACGTCGGc < 2:429431/150‑1 (MQ=255) aCCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCGGCCTg > 2:200919/1‑150 (MQ=255) cACTGCACAAGGGCATGGTTTCTGACCGCGGCCTTAAGCCGTGCGACGAGCTGCGCCCGCCGAACTTGAGACCATCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCGGCCTGCTCTGATGACTGCCGCCCTGTc < 1:215941/150‑1 (MQ=255) cACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGCCGGGTTCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCGGCCTGCTCTGATGACTGCCGCCCTGTc > 1:418089/1‑150 (MQ=255) aacggTTTCAGGCCGCGGTCAGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCGGCCTGCTCTGATGACTGCCGCCCTGTCCGAACCGGTGCCg > 2:228501/4‑150 (MQ=255) aTGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCGGCCTGCTCTGATGACTGCCGCCCTGTCCGAACCGGTGCCgg > 2:74665/1‑150 (MQ=255) | ATCTCCGGCGCAGGCGTGGTCAAGGCCAGCAAACACCCGAAAGAAGCCCAGGCCCTGCTCAACTGGATGGCCAGCGAAGAAGGCCAGCGCGTGATCACCCAGACCACCGCCGAGTACCCACTGCACAAGGGCATGGTTTCTGACCGCGGCCTGAAACCGTTCGACGAGCTGCGCCCGCCGAAGATCTCGCCAGCTGACCTGGGCAATGCCGAGGAAGCCATCGAACTTGAGCGTGAGGTCGGCCTGCTCTGATGACTGCCGCCCTGTCCGAACCGGTGCCGG > NC_002947/5550569‑5550850 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |