| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 690,514 | C→A | 15.2% | V42V (GTG→GTT) | PP_0591 ← | adenosine deaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 690,514 | 0 | C | A | 15.2% | 62.2 / 4.3 | 27 | V42V (GTG→GTT) | PP_0591 | adenosine deaminase |
| Reads supporting (aligned to +/- strand): ref base C (11/11); new base A (2/2); total (13/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.05e-01 | |||||||||||
GATCACGTTCTGGGCCTTGCAGCGTTGCAGGTAGGCCCAGGTCAGGTCGTAGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAGGGCGTTCAACCAGTCATACATAGTG > NC_002947/690367‑690643 | gATCACGTTCTGGGCCTTGCAGCGTTGCAGGTAGGCCCAGGTCAGGTCGTAGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTACAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCcac > 1:176397/1‑150 (MQ=255) cGTTCTGGGCCTTGCAGCGTTGCAGGTAGGCCCAGGTCAGGTCGTAGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCgg > 1:224167/1‑150 (MQ=255) gTTCTGGGCCTTGCAGCGTTGCAGGTAGGCCCAGGTCAGGTCGTAGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCTCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGc > 1:162454/1‑150 (MQ=255) gTAGGCCCAGGTCAGGTCGTAGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTgcg > 1:176320/1‑150 (MQ=255) aGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAgg > 1:134891/1‑117 (MQ=255) aGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAgg < 2:134891/117‑1 (MQ=255) aTCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCcag > 1:291858/1‑150 (MQ=255) aTACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTc < 2:176320/150‑1 (MQ=255) tACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCg < 1:400178/150‑1 (MQ=255) aGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCAACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTc > 2:337966/1‑128 (MQ=255) aGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCAACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTc < 1:337959/128‑1 (MQ=255) aGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCAACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTc < 1:337966/128‑1 (MQ=255) aGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCAACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTc > 2:337959/1‑128 (MQ=255) gTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTcc < 1:55855/52‑1 (MQ=255) gTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTcc > 2:55855/1‑52 (MQ=255) gAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTgg > 2:309321/1‑149 (MQ=255) gAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTgg < 1:309321/149‑1 (MQ=255) aaCTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGACAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCcaggtgcag < 1:361796/128‑1 (MQ=255) aaCTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGACAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCcaggtgcag > 2:361796/1‑128 (MQ=255) aCTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAggg < 1:461144/87‑1 (MQ=255) aCTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAggg > 2:461144/1‑87 (MQ=255) aCTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCg > 1:127412/1‑137 (MQ=255) aCTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCg < 2:127412/137‑1 (MQ=255) cTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAAGGCGtt > 2:56175/1‑150 (MQ=255) gtagtttgttgAAGGCATAGGCACCGCGAAAGGTGTCTTCATCGGCCCAGGGTAAGGCGATCTTGTTGCGCTTGGCCAGGGTGAACAGCATCTCTGGCTCCAGTGAGGCTTCTAGGTGTAGGTGCAGTTTGGTCTTGGGCTGGTCGTTct < 2:176397/145‑2 (MQ=255) gttgttGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAggg > 2:2844/1‑140 (MQ=255) gttgttGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAggg < 1:2844/140‑1 (MQ=255) tgttgAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAGGGCGTTCAACCAGt < 2:224167/150‑1 (MQ=255) cagaGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCCGGGAGGCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAGGGCGTTCAACCAGTCATACATAg < 2:69227/147‑1 (MQ=255) tAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAAGGCGTTCAACCAGTCATACATAGTg < 1:56175/150‑1 (MQ=255) | GATCACGTTCTGGGCCTTGCAGCGTTGCAGGTAGGCCCAGGTCAGGTCGTAGAAGTCCTGCTCGGTGCGCAGCACATCCGCGCCCTGGTAATACAGGTCGAGGAACTCCTGCAGGTTGTTGAAGGCATAGGCACCGCGCAAGGTCTCCACATCGGCCCAGGGCAAGGCGATCTTGTTGCGCTCGGCCAGGGCGAACAGCAACTCTGGCTCCAGTGAGCCTTCCAGGTGCAGGTGCAGTTCGGCCTTGGGCAGGGCGTTCAACCAGTCATACATAGTG > NC_002947/690367‑690643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |