| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,002,481 | C→A | 10.3% | intergenic (‑125/+21) | amaA ← / ← amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,002,481 | 0 | C | A | 10.3% | 107.5 / 3.5 | 39 | intergenic (‑125/+21) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (16/19); new base A (2/2); total (18/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.30e-01 | |||||||||||
TCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCACCGCCGGTTTCCTTCTC > NC_002947/6002337‑6002627 | tCGGCCATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTTTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCa < 2:153451/150‑1 (MQ=255) aCATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATgca > 1:462213/1‑150 (MQ=255) ggCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCAt > 1:456938/1‑150 (MQ=255) cTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATAc < 1:504286/150‑1 (MQ=255) aGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCa > 2:132503/1‑150 (MQ=255) ttCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCAGGCCATGCAGCATCAATACATCAGTCGAacac > 2:182832/1‑150 (MQ=255) ttCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCAGGCCATGCAGCATCAATACATCAGTCGAacac > 2:182819/1‑150 (MQ=255) cTTGTTGGGGCCGGAGGGCGGCCCTTTGGCGGGGAAGCCCGCTCGTACAGGGGTGGGTGTCGCTGGGGCGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCACGGCCATGCAGCATCAATACATCAGTCGAACACGa < 2:77779/150‑1 (MQ=255) gggCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTg < 1:95786/150‑1 (MQ=255) aGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCTGTCCCCCTGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGc < 2:451313/150‑1 (MQ=255) aGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATa < 1:345732/120‑1 (MQ=255) aGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATa > 2:345732/1‑120 (MQ=255) cTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCCTGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTcg > 2:160009/1‑150 (MQ=255) tCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTcgcgc < 1:275419/150‑1 (MQ=255) tCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCAGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTcgcgc < 1:182832/150‑1 (MQ=255) tCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCAGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTcgcgc < 1:182819/150‑1 (MQ=255) gcgGGTAACCCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGa < 1:360528/150‑1 (MQ=255) gcgGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTcgcgcgg > 2:17242/1‑149 (MQ=255) ccGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACg > 2:85185/1‑150 (MQ=255) ccGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACg < 2:456938/150‑1 (MQ=255) cTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGCACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTg > 1:54911/1‑150 (MQ=255) cAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTc > 1:230253/1‑150 (MQ=255) gggTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTgg < 2:54911/150‑1 (MQ=255) gggTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTgg < 2:230253/150‑1 (MQ=255) tCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATg < 1:132503/150‑1 (MQ=255) aCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAg < 2:207887/150‑1 (MQ=255) aCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAg < 1:52796/150‑1 (MQ=255) ccTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGc > 1:495802/1‑150 (MQ=255) cTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCAt > 2:226527/1‑134 (MQ=255) cTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCAt < 1:226527/134‑1 (MQ=255) ttcgCGGGTAGACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAGCACGATACCCTGCGCCAGCGGc > 2:366554/4‑88 (MQ=255) ttcgCGGGTAGACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGc < 1:366554/85‑1 (MQ=255) ggAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGa < 1:85185/150‑1 (MQ=255) ccGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACgg > 2:456433/1‑150 (MQ=255) ccGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACgg > 2:262564/1‑150 (MQ=255) cGGGGGCCTGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCAccgcc > 1:15492/1‑150 (MQ=255) gggggCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGTTCACGCGAGTATTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCAccgccg < 2:295894/150‑1 (MQ=255) gggCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCACCGCCGGt < 1:262564/150‑1 (MQ=255) ccAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCACCGCCGGTTTc > 2:75602/1‑150 (MQ=255) ccccGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCACCGCCGGTTTCCTtctc < 2:441955/150‑1 (MQ=255) ccccGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCACCGCCGGTTTCCTtctc < 2:462213/150‑1 (MQ=255) ccccGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCACCGCCGGTTTCCTtctc < 2:495802/150‑1 (MQ=255) | TCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTCGGTGTCGCTTGGACGAACCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCCACCGCCGGTTTCCTTCTC > NC_002947/6002337‑6002627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |