| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,138,500 | T→A | 16.9% | F300Y (TTC→TAC) ‡ | czcC → | CzcC family metal RND transporter outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,138,500 | 0 | T | A | 16.9% | 52.9 / 3.9 | 24 | F300Y (TTC→TAC) ‡ | czcC | CzcC family metal RND transporter outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (11/8); new base A (2/2); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
CCATGACCCGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCTACAACGGGCAG > NC_002947/6138356‑6138643 | ccATGACCCGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAAGTCAGCAACCTGGTAATTGGCGAGGTCAGTTTTCAATTGCCGCTGTTCAGCg > 2:40714/1‑150 (MQ=255) cATGACCCGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCgg > 2:329884/1‑150 (MQ=255) cccGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGAACAGCGGcaatt < 2:488335/150‑5 (MQ=255) aaGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCga < 1:40714/150‑1 (MQ=255) ccATGTGCATCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGAACAGCGGcaa < 2:489842/132‑3 (MQ=255) ccAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGAACAGCGGcaa > 1:489842/1‑130 (MQ=255) ggTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCgc < 2:155371/150‑1 (MQ=255) agGCCATCGCCGAGAAAAAGTCGGATTGGGGCACGACGGTCTACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGcc < 2:501416/150‑1 (MQ=255) aTCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCgat > 1:319703/1‑131 (MQ=255) aTCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCgat < 2:319703/131‑1 (MQ=255) cGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGt > 1:244355/1‑150 (MQ=255) aaaaGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTc > 2:238352/1‑150 (MQ=255) gATTGGGGCTGGCAGGTCGACTAGCAACGCCGGGGGCCCGCATTAAGCAACATGGTCAGTGTCGAGGTCAGATTTCAATTGCCGCTGTTCAGCGGCCCGAGGTAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGTGTCGGCTggag > 2:79544/1‑150 (MQ=255) tCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCgg < 1:75691/150‑1 (MQ=255) aCGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGa < 1:238352/150‑1 (MQ=255) aGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGaa > 2:425194/1‑150 (MQ=255) aGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGaa > 2:461102/1‑150 (MQ=255) gCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAg < 1:329884/150‑1 (MQ=255) tCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAAt > 2:247202/1‑150 (MQ=255) tCCAGGGCAGTTTGCAATTGCCGCTGTGCAGCGGCTCGCGGCAAGACCCGACCATCGCTGCTCCCCCGGCCCACGTGCGACCGCTGGACGACCAACACGAAGCGGCCCTGCGTGAGCAGACCGCGCAAAGCGAAGCTGACCTGGCGTaaa > 2:485725/1‑149 (MQ=255) gTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGAGGCACTGCGTGAGCACACCGCGCAACTCGTAGCTGACCTGGCGGAATACCaa > 2:55744/1‑150 (MQ=255) aGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGc < 1:385594/150‑1 (MQ=255) cgagCCGCTGAACAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCTACAACg > 1:304090/4‑150 (MQ=255) cGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTGCGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCTACAACCGGCAg > 1:236726/1‑150 (MQ=255) | CCATGACCCGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCTACAACGGGCAG > NC_002947/6138356‑6138643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |