| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,219,480 | C→T | 16.0% | S337S (AGC→AGT) | PP_1064 → | alpha/beta family hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,219,480 | 0 | C | T | 16.0% | 48.0 / 4.2 | 25 | S337S (AGC→AGT) | PP_1064 | alpha/beta family hydrolase |
| Reads supporting (aligned to +/- strand): ref base C (7/14); new base T (2/2); total (9/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
CGCCAGATCATGGCGATACTGGCCGAGCCGAGCCGCGTCGAGTTGCTCAACCAGTTGCGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTATTTGCAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGT > NC_002947/1219334‑1219628 | cgcCAGATCATGGCGATACTGGCCGAGCCGAGCCGCGTCGAGTTGCTCAACCAGTTGCGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAg < 1:117431/150‑1 (MQ=255) aTGGCGATACTGGCCGAGCCGAGCCGCGTCGAGTTGCTCAACCAGTTGCGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTg > 2:508146/1‑150 (MQ=255) gccgagccgaGCCGCGTCGAGTTGCTCAACCAGTTGCGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTg < 2:479618/150‑1 (MQ=255) cgagccgagcCGCGTCGAGTTGCTCAACCAGTTGCGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTTgc < 1:508146/150‑1 (MQ=255) aGTTGCGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGgcgc < 2:127830/150‑1 (MQ=255) cGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTa > 2:19242/1‑150 (MQ=255) gCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTggg < 1:293301/150‑1 (MQ=255) cGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGTCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCa < 2:358384/132‑1 (MQ=255) cGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGTCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCa < 2:358212/132‑1 (MQ=255) cGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGTCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCa > 1:358212/1‑132 (MQ=255) cGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGTCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCa > 1:358384/1‑132 (MQ=255) ccTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGgt > 2:494808/1‑150 (MQ=255) cTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGgtg > 2:392225/1‑150 (MQ=255) ggtggtACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTTGCGGCGCATATCCGGGGCAGCCAGTCGCGCTTGATCCCGGGGCCGGCGCACCGTTTCCAGGAGCCGTTCACGGCGCCGTTACTGGGGGCGGTGtt > 1:147121/1‑150 (MQ=255) ggtggtACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGtt < 1:392225/150‑1 (MQ=255) acacGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTa < 2:270986/150‑1 (MQ=255) acacGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTa < 1:335618/150‑1 (MQ=255) cacggcTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTATTTGCa < 1:19242/150‑1 (MQ=255) tGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATc < 1:49786/73‑1 (MQ=255) tGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATc > 2:49786/1‑73 (MQ=255) gcATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTATTTGCAGGCGCACAGGGAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGt < 1:410980/150‑1 (MQ=255) ggggCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTATTTGCAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCg > 2:9388/1‑150 (MQ=255) ggggCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTATTGCCTCGGTCGCCAGTCATCAGCCAAGATGTCACTCACATCGCAGGGCTCTGAATCGGCGTCGATTTCg < 1:9388/150‑1 (MQ=255) cAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTATTTGCAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCa < 1:91470/150‑1 (MQ=255) gCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTATTTGCAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGt < 2:220632/150‑1 (MQ=255) | CGCCAGATCATGGCGATACTGGCCGAGCCGAGCCGCGTCGAGTTGCTCAACCAGTTGCGAGTGCCGACCCTGGTGGTACACGGCACGGCTGATCCGTTATTGCCGGTGATGCATGGCGTGCACTTGGCGGCGCATATCCGGGGCAGCCAGTTGCGCTTGATCCCGGGGCTGGCGCACCGTTTCCAGGAGCCGTTCAAGGCGCCGTTACTGGGGGCGGTGTTGCCTTATTTGCAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGT > NC_002947/1219334‑1219628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |