| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,453,565 | C→A | 23.5% | P64P (CCC→CCA) | PP_1272 → | multidrug MFS transporter membrane fusion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,453,565 | 0 | C | A | 23.5% | 29.2 / 4.5 | 17 | P64P (CCC→CCA) | PP_1272 | multidrug MFS transporter membrane fusion protein |
| Reads supporting (aligned to +/- strand): ref base C (8/5); new base A (2/2); total (10/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
CCAACAACCGCAAAACCCTTTTCATCGGCTCGGTGCTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGATGCTGCGCAGGCGCAGTTGCTGGTAGCCC > NC_002947/1453420‑1453701 | ccAACAACCGCAAAACCCTTTTCATCGGCTCGGTGCTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCAAAAg > 2:330246/1‑150 (MQ=255)ccAACAACCGCAAAACCCTTTTCATCGGCTCGGTGCTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCAAAAg > 2:330242/1‑150 (MQ=255) ccTTTTCATCGGCTCGGTGCTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATcaa > 1:136249/1‑150 (MQ=255) cTCGGTGCTGGCCGTGGCCCTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGCCGCCTATGTGCCCGCCGACTACACCGTGGTCGCGCCCAACGTCGCCGGTTTCATCAAGCAAGTGCtggt < 1:210569/150‑1 (MQ=255) gTGCTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGaa < 1:461309/150‑1 (MQ=255) cTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCAAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGAc < 1:330242/150‑1 (MQ=255) cTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCAAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGAc < 1:330246/150‑1 (MQ=255) ccgtggccgtCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATc > 1:161476/1‑150 (MQ=255) cccTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCGCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCAAGTTGCTGGca > 2:88339/1‑149 (MQ=255) cTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGAAAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGAc > 2:119136/1‑150 (MQ=255) aCCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTg > 1:257961/1‑150 (MQ=255) aaTGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGAt < 2:161476/150‑1 (MQ=255) aaTGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTGCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGAt > 1:257784/1‑150 (MQ=255) tgtgACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCTTCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGATGCTgcgcaggc < 1:437361/150‑1 (MQ=255) ccgACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGATGCTGCGCAGGCGCAGTTGc > 1:333150/1‑150 (MQ=255) aCTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGATGCTGCGCAGGCGACGTTGATgg < 2:136249/150‑1 (MQ=255) ccGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGCCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGATGCTGCGCAGGCGCAGTTGCTGGTAGccc > 1:139778/1‑150 (MQ=255) | CCAACAACCGCAAAACCCTTTTCATCGGCTCGGTGCTGGCCGTGGCCGTCCTGGCCGGCATCGTCGGCCCCTGGATGTTTGGCAGCGATCACCGCCAGAGCACCAATGACGCCTATGTGACCGCCGACTACACCGTGGTCGCGCCCAAAGTCGCCGGTTTCATCAAGCAAGTGCTGGTGGAAGACAATCAGCAGGTCACAGCTGGCCAGTTGCTGGCGACCATCGACGCGCGTGACTACCAGGCCGCGCTGGATGCTGCGCAGGCGCAGTTGCTGGTAGCCC > NC_002947/1453420‑1453701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |