New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5560460 =	33 (1.100)	6 (0.210)	6/274	2.7	15.9%	coding (88/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	NC_002947	5560489 =	31 (1.060)					coding (59/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
Rejected: Frequency below/above cutoff threshold.

CCCATCAGGCGGCCGGACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGG  >  NC_002947/5560312‑5560607                                                                                                                                                     |                                                                                                                                                     atcagtgctgcccgctgctgtgcgcgataccggcttttctgacggtttgcctgctggcaagccgcccggaccagaggggaaatggcgtaatggcaacggtagaccgctggctgctgccagatggcatcgaggaagtactgccacctgagg                                                                                                                                                     <  1:279796‑M1/2‑1 (MQ=255)     tCAGGCGGCCGGACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTggcggc                                                                                                                                                 <  1:359266/150‑1 (MQ=255)                gACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCg                                                                                                                                      <  2:515949/150‑1 (MQ=255)                      gggTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑gcgc                                                                                                                               <  1:39055/150‑1 (MQ=255)                            aCTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGcc                                                                                                                         >  2:90980/1‑150 (MQ=255)                                  ttGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGt                                                                                                                   >  1:272605/1‑150 (MQ=255)                                    gAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTgg                                                                                                                 >  2:686155/1‑150 (MQ=255)                                           cgcTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACt                                                                                                          >  2:562503/1‑150 (MQ=255)                                                                           cagcGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCTGctgccagatg                                                                            <  1:324195/148‑4 (MQ=255)                                                                           cagcGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCTGctgccagatg                                                                            >  2:324195/1‑145 (MQ=255)                                                                             gcGGCTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTa                                                                        <  1:90980/150‑1 (MQ=255)                                                                                         aCTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTCCCGTTGCCAttc                                                            >  2:106818/1‑149 (MQ=255)                                                                                           tCGATATGCGCGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTAcc                                                          >  2:176992/1‑149 (MQ=255)                                                                                                 tGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCAttt                                                    <  1:562503/150‑1 (MQ=255)                                                                                                       gTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCctc                                              >  1:35444/1‑150 (MQ=255)                                                                                                            gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTTGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTc                                         >  1:87477/1‑150 (MQ=255)                                                                                                            gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGcc                                                                >  1:417079/1‑127 (MQ=255)                                                                                                            gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGcc                                                                <  2:417079/127‑1 (MQ=255)                                                                                                            gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTc                                         >  2:658327/1‑150 (MQ=255)                                                                                                                  ttCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGggcg                                   <  2:272605/150‑1 (MQ=255)                                                                                                                   tgccagatggcatcgaggaagtactgccacctgaGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGt                                                                                                                   >  1:447182‑M1/35‑69 (MQ=255)                                                                                                                   tgccagatggcatcgaggaagtactgccacctgaGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGt                                                                                                                   <  2:447182‑M1/35‑1 (MQ=255)                                                                                                                        gatggcatcgaggaagtactgccacctgaGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCt                                                                                                                        >  2:61224‑M1/30‑59 (MQ=255)                                                                                                                        gatggcatcgaggaagtactgccacctgaGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCt                                                                                                                        <  1:61224‑M1/30‑1 (MQ=255)                                                                                                                        gCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGc                             <  1:136769/150‑1 (MQ=255)                                                                                                                        gCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGc                             <  2:35444/150‑1 (MQ=255)                                                                                                                          cccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCca                           >  2:659810/1‑150 (MQ=255)                                                                                                                          cccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCca                           <  2:87477/150‑1 (MQ=255)                                                                                                                           ccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCcag                          >  2:279796/1‑150 (MQ=255)                                                                                                                                tctGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCGGGc                     >  2:181269/1‑150 (MQ=255)                                                                                                                                          gTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCcag                          <  2:125290/135‑1 (MQ=255)                                                                                                                                          gTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCcag                          >  1:125290/1‑135 (MQ=255)                                                                                                                                          gTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAg           >  2:659266/1‑150 (MQ=255)                                                                                                                                           tgccacctgaGGCTGCGCGC‑ATCGAGATCGCGCGCCGCC‑‑AGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGaaa        <  2:145119‑M1/140‑1 (MQ=255)                                                                                                                                            ccAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGAACACTACCATCAAGGTCCGGCCTCGATGCCATCTGGCAGACGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGaa         <  1:686155/150‑1 (MQ=255)                                                                                                                                             cAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGaaa        >  1:172658/1‑150 (MQ=255)                                                                                                                                              cacctgaGGCTGCGCGC‑ATCGAGATCGCGCGCCGCC‑‑AGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGc     >  1:145119‑M1/8‑150 (MQ=255)                                                                                                                                               acacCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTNCTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTTCCGGCAAGCAAACCGGCAAAAAAg      >  1:269647/1‑150 (MQ=255)                                                                                                                                                  cttGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCTGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCg   <  1:542151/148‑1 (MQ=255)                                                                                                                                                   cTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCgg  <  2:65110/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCCATCAGGCGGCCGGACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAT‑GCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGG  >  NC_002947/5560312‑5560607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.