New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3622266	25 (0.840)	6 (0.220)	6/256	2.5	20.4%	intergenic (‑186/+40)	PP_3192/PP_3193	hypothetical protein/hypothetical protein
	?	NC_002947	= 3622288	24 (0.880)					intergenic (‑208/+18)	PP_3192/PP_3193	hypothetical protein/hypothetical protein

AAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCT  >  NC_002947/3622139‑3622429                                                                                                                                                      |                                                                                                                                              aaGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGaa                                                                                                                                               <  2:291436/150‑1 (MQ=255) aaGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGaa                                                                                                                                               >  2:451847/1‑150 (MQ=255)     cGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAAcagg                                                                                                                                           >  1:401798‑M2/1‑146 (MQ=255)      ggAGCTTTGCCTGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCGCCAGAGGCATCCGCAGCATGGGGCGACCTCTCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAAcaggc                                                                                                                                          >  2:61724‑M2/1‑145 (MQ=255)                cgtgTCGGGATCAAGGCCTGGCTGCGAGCCGCTATCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTg                                                                                                                                <  2:117004/147‑1 (MQ=255)                cGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTg                                                                                                                                <  1:451847/150‑1 (MQ=255)                    tCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTc                                                                                                                            >  1:557920/1‑150 (MQ=255)                              ggCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGTGTTGGCTCAGGGCTGAAg                                                                                                                  >  1:610467/1‑150 (MQ=255)                                       gCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCt                                                                                                         <  1:191842/150‑1 (MQ=255)                                                    cTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGc                                                                                            >  1:151239/1‑150 (MQ=255)                                                                   gTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGa                                                                                        >  2:664029/1‑139 (MQ=255)                                                                   gTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGa                                                                                        <  1:664029/139‑1 (MQ=255)                                                                   gTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATg                                                                             >  2:676172/1‑150 (MQ=255)                                                                     cagcagCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGc                                                                           <  2:151239/150‑1 (MQ=255)                                                                       gcagcaTCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCca                                                                         >  1:319828/1‑150 (MQ=255)                                                                               ccAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAgcgcg                                                                 >  2:494907/1‑150 (MQ=255)                                                                                cAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGt                                                                                                                                  >  1:311676/1‑84 (MQ=255)                                                                                cAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGt                                                                                                                                  <  2:311676/84‑1 (MQ=255)                                                                                           gagGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCg                                                     >  2:574238/1‑150 (MQ=255)                                                                                            agGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGt                                                    >  2:252756/1‑150 (MQ=255)                                                                                                                  ccTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTTGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGAc                              <  1:676172/150‑1 (MQ=255)                                                                                                                   cTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAAcaggccaaggcgaggtcgccccatgctgcggatgcctctggaggacctgggatgctgctgacgcagtaatggccgaggcgagcggctcgcagccaggccttgatcccgacccgg                             <  1:360566‑M2/150‑115 (MQ=255)                                                                                                                    tCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGc                            >  1:690865/1‑150 (MQ=255)                                                                                                                        cTTGGCCTGGCTCCGCCAATTGTTGGTGGAAcaggccaaggcgaggtcgccccatgctgcggatgcctctggaggacctgggatgctgctgacgcagtaatggccgaggcgagcggctcgcagccaggcct                                           <  1:190187‑M2/131‑101 (MQ=255)                                                                                                                        cTTGGCCTGGCTCCGCCAATTGTTGGTGGAAcaggccaaggcgaggtcgccccatgctgcggatgcctctggaggacctgggatgctgctgacgcagtaatggccgaggcgagcggctcgcagccaggcct                                           >  2:190187‑M2/1‑31 (MQ=255)                                                                                                                              cTGGCTCCGCCAATTGTTGGTGGAAcaggccaaggcgaggtcgccccatgctgcggatgcctctggaggacctgggatgctgctgacgcagtaatggccgaggcgagcggctcgcagccaggccttgatcccgacccggcaaagatccgt                  <  1:658889‑M2/150‑126 (MQ=255)                                                                                                                                ggCTCCGCCAATTGTTGGTGGAACAGGCCAAGGTGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGTCGCTCAGCCCGCGCGCTTCCATGCTTTGCAGCGCTCGTCGCTCAAGGTAGTGCGAGGTATCTCCACTGACGCCGATGGCGCCca                <  2:610467/150‑1 (MQ=255)                                                                                                                                 gCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGa                                             <  2:499441/120‑1 (MQ=255)                                                                                                                                 gCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGa                                             >  1:499441/1‑120 (MQ=255)                                                                                                                                    ccGCCAATTGTTGGTGGAAcaggccaaggcgaggtcgccccatgctgcggatgcctctggaggacctgggatgctgctgacgcagtaatggccgaggcgagcggctcgcagccaggccttgatcccgacccggcaaagatccgtcttgtg            >  2:360566‑M2/1‑19 (MQ=255)                                                                                                                                       ccAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCg         >  1:694584/1‑150 (MQ=255)                                                                                                                                        cAATTGTTGGTGGAAcaggccaaggcgaggtcgccccatgctgcggatgcctctggaggacctgggatgctgctgacgcagtaatggccgaggcgagcggctcgcagccaggccttgatcccgacccggcaaagatccgtcttgtgccca        >  2:658889‑M2/1‑15 (MQ=255)                                                                                                                                              ttgGTGGAACAGGCCAAGGCGGTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCt  <  1:256255/150‑1 (MQ=255)                                                                                                                                              ttgGTGGAACAAGCCAAGGGGGTGGCGCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGCGTAGTTCGATGGCCAGCAGCGCGCACCGCTCATCGTGGTCCGATGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCt  <  1:574238/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                              AAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCT  >  NC_002947/3622139‑3622429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.