| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5382480 | 15 (0.500) | 5 (0.220) | 5/210 | 2.3 | 27.6% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | = 5382508 | 15 (0.670) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
GCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGG > NC_002947/5382373‑5382655 | gcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgg < 2:481754‑M2/150‑15 (MQ=255) ccAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgc > 1:29906‑M2/1‑130 (MQ=255) aaCCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCCCTTCGTTCAAGCCCCGGCGCCTAtcctgtgggagcgggcttggc < 1:538945‑M2/150‑22 (MQ=255) aCCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccg > 1:88681‑M2/1‑127 (MQ=255) gCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggctt > 1:219521‑M2/1‑110 (MQ=255) gCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggctt < 2:219521‑M2/128‑19 (MQ=255) tgCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccgcgaaga < 1:385218‑M2/135‑30 (MQ=255) tgCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccgcgaaga > 2:385218‑M2/1‑106 (MQ=255) gTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTgc < 1:481754/150‑1 (MQ=255) gTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGACAAGCCCGCTCCCACAGGAATGGCCCCCGATTTAAGCCC‑GCCGCCTCTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCACATCAAAGCCTCAGCGCCCGCTgc > 2:157418/1‑150 (MQ=37) tgCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGc > 1:342174/2‑150 (MQ=255) cccGATCCCACAGGAATGGCACCAGAGTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGGGGCCGGTACTGCCGATAGAAGCCTCCGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGcc > 2:135055/1‑150 (MQ=39) ccGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttc < 1:212716‑M2/103‑62 (MQ=255) ccGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttc > 2:212716‑M2/1‑42 (MQ=255) ccGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCt > 2:585945/1‑150 (MQ=255) ccACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgca > 1:666836/1‑150 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgc < 2:362062‑M2/121‑87 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgc > 1:362062‑M2/1‑35 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcag > 1:152427/1‑150 (MQ=255) acaGGAATGGCACCAGATTCAAGCCC‑GGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggtttgaatcgcgttcgcgc < 2:32711‑M2/150‑117 (MQ=255) acaGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCTGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcagc > 1:352236/1‑150 (MQ=255) ggCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTg > 1:535144/1‑150 (MQ=255) ccAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGcacc > 2:99455/1‑149 (MQ=255) cAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACAt > 1:414292/1‑150 (MQ=255) aaGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCg > 1:388677/1‑102 (MQ=255) aaGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCg < 2:388677/102‑1 (MQ=255) cc‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGc < 2:666836/150‑1 (MQ=255) cTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTgg > 1:627490/1‑150 (MQ=255) | GCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCC‑GGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGG > NC_002947/5382373‑5382655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |