New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5453186	9 (0.300)	8 (0.410) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA	5/184	2.0	58.9%	intergenic (+151/‑204)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase
	?	NC_002947	5545674 =	8 (0.270)					intergenic (‑766/+111)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

CAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTC  >  NC_002947/5545584‑5545817                                                                                           |                                                                                                                                                cAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCaa                                                                                      >  2:409510/1‑150 (MQ=255)            gcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTcc                                                                                                     >  1:504616‑M2/80‑124 (MQ=255)            gcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTcc                                                                                                     <  2:504616‑M2/45‑1 (MQ=255)              ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt                                                                                                            <  1:590911‑M2/38‑1 (MQ=255)              ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt                                                                                                            <  1:590999‑M2/38‑1 (MQ=255)              ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt                                                                                                            >  2:590911‑M2/78‑115 (MQ=255)              ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt                                                                                                            >  2:590999‑M2/78‑115 (MQ=255)              ggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGa                                                                         >  2:701729/1‑150 (MQ=255)               gttggcccggtagggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTtgctgcgc                                                                                                                                      >  1:478028‑M2/77‑85 (MQ=255)               gttggcccggtagggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTgcgc                                                                                                                                      <  2:478028‑M2/12‑1 (MQ=255)                                                 cTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGCGCCACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTga                                      <  2:169739/150‑1 (MQ=255)                                                                   gCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                   >  1:528325/1‑119 (MQ=255)                                                                   gCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                   <  2:528325/119‑1 (MQ=255)                                                                    cAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGt                                                                   <  1:352304/102‑1 (MQ=255)                                                                    cAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGt                                                                   >  2:352304/1‑102 (MQ=255)                                                                                     gcATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTc  <  1:409510/150‑1 (MQ=255)                                                                                           |                                                                                                                                                CAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTC  >  NC_002947/5545584‑5545817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.