New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5594170	39 (1.300)	6 (0.250)	5/224	2.5	14.6%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594207	39 (1.630)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
Rejected: Frequency below/above cutoff threshold.

GGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGC  >  NC_002947/5594064‑5594350                                                                                                                                                |                                                                                                                                                gggATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcg                                                                                                                                           >  2:12025‑M2/1‑144 (MQ=255)        gATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagc                                                                                                                                    <  2:544464‑M2/150‑14 (MQ=255)               gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcg                                                                                                                                           <  2:427115‑M2/136‑7 (MQ=255)               gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcg                                                                                                                                           <  2:408628‑M2/136‑7 (MQ=255)               gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcg                                                                                                                                           >  1:427115‑M2/1‑130 (MQ=255)               gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcg                                                                                                                                           >  1:408628‑M2/1‑130 (MQ=255)                   gagaACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccaca                                                                                                                         >  1:168638‑M2/1‑126 (MQ=255)                      aaCTGGCTGGTTGCTGTCACAGTAATGCCCTCAGGATTTAGTTTAAGTGCCAAACACCACCCTGTGGGACCGGGCTTGCCCCCGAACACCGCAAAAGCCGGTGCCATGCACCGCCGTCCTTGCTTCGCGGGCAAGCCCGCTCCCACAggg                                                                                                                      <  1:295875/150‑1 (MQ=16)                               ggTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgct                                                                                                             <  2:67137/150‑1 (MQ=255)                                gTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctg                                                                                                            <  2:382347/150‑1 (MQ=255)                                     gtcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGtt                                                                                                       >  2:531186/1‑150 (MQ=255)                                      tcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGttt                                                                                                      <  2:10634/150‑1 (MQ=255)                                      tcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGttt                                                                                                      >  1:98817/1‑150 (MQ=255)                                      tcatggacatgTACGCATGAGTGGGGTTAATTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCACGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGttt                                                                                                      >  2:508415/1‑150 (MQ=25)                                       catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTCCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCACGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                     <  1:531186/150‑1 (MQ=255)                                             catgTCCGCAGGAGTGATGTTAAGTGGCATGCACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACttt                                                                                               >  1:658859/1‑150 (MQ=255)                                              atgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtg                                                                                              >  1:223570/1‑150 (MQ=255)                                                 tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTgg                                                                                           >  2:43178/1‑150 (MQ=255)                                                    gCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTAc                                                                                        >  1:341672/1‑150 (MQ=255)                                                         aGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTACTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctg                                                                                   >  1:35318/1‑150 (MQ=255)                                                           tGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctggc                                                                                 >  2:313234/1‑150 (MQ=255)                                                           tGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctggc                                                                                 >  2:674837/1‑150 (MQ=255)                                                              tGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGc                                                                              >  2:226255/1‑150 (MQ=255)                                                              tGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGc                                                                              >  2:155188/1‑150 (MQ=255)                                                               gTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGcc                                                                             >  2:292370/1‑150 (MQ=255)                                                                     gggCATACACCACCCGGTGGGAGCGGGCTTGCCCGCGAACACCGGAAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTg                                                                       <  2:230115/149‑1 (MQ=255)                                                                         aTACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCgg                                                                   >  2:138260/1‑150 (MQ=255)                                                                            caccacCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAAc                                                                <  1:138260/150‑1 (MQ=255)                                                                                 cccTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTc                                                           >  1:174147/1‑150 (MQ=255)                                                                                      tgGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCt                                                      >  1:254900/1‑150 (MQ=255)                                                                                        ggAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGc                                                    <  1:292370/150‑1 (MQ=255)                                                                                               gCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCa                                             >  2:460604/1‑150 (MQ=255)                                                                                                 ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTACTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATg                                           <  2:35318/150‑1 (MQ=255)                                                                                                 ttGCCCGCGAACACCGGCAAAGCCGGAAACATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcacccagccagttctctcccgaccatcca                                           <  1:550002‑M2/150‑103 (MQ=255)                                                                                                   gCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcacccagccagttctctcccggccatccaat                                         <  2:554665‑M2/150‑105 (MQ=255)                                                                                                     ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcacccagccagttctctcccgaccatccaat                                         >  2:110182‑M2/1‑44 (MQ=255)                                                                                                     ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcacccagccagttctctcccgaccatccaat                                         <  1:110182‑M2/148‑105 (MQ=255)                                                                                                     ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcaccca                                                                  >  2:596238‑M2/1‑44 (MQ=255)                                                                                                     ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcaccca                                                                  <  1:596238‑M2/123‑80 (MQ=255)                                                                                                       gcgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGc                                     <  2:223570/150‑1 (MQ=255)                                                                                                         gAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTc                                   <  2:174147/150‑1 (MQ=255)                                                                                                             acCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGAcc                               <  1:460604/150‑1 (MQ=255)                                                                                                                 gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTca                           >  2:686858/1‑150 (MQ=255)                                                                                                                       ccGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt                                    <  1:182942/135‑1 (MQ=255)                                                                                                                       ccGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt                                    >  2:182942/1‑135 (MQ=255)                                                                                                                        cGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                                                             <  1:123128/77‑1 (MQ=255)                                                                                                                        cGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                                                             >  2:123128/1‑77 (MQ=255)                                                                                                                         ggTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACg                   <  2:98817/150‑1 (MQ=255)                                                                                                                            gCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGcc                <  1:686858/150‑1 (MQ=255)                                                                                                                               aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCg             >  2:637940/1‑150 (MQ=255)                                                                                                                                     cGCCGTGATTGCTTTGCGGGTGATCGCGCACTCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGCGCTGCCGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg       <  1:508415/150‑1 (MQ=255)                                                                                                                                     cGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg       <  2:341672/150‑1 (MQ=255)                                                                                                                                          tgcttgctTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGc  <  1:637940/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                GGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGC  >  NC_002947/5594064‑5594350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.