| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,545,683 | 0 | T | C | 50.0% | ‑4.1 / 13.5 | 14 | intergenic (‑775/+102) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| Reads supporting (aligned to +/- strand): ref base T (4/3); new base C (3/4); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTC > NC_002947/5545584‑5545817 | cAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCaa > 2:409510/1‑150 (MQ=255) gcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTcc > 1:504616‑M2/80‑124 (MQ=255) gcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTcc < 2:504616‑M2/45‑1 (MQ=255) ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt < 1:590911‑M2/38‑1 (MQ=255) ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt < 1:590999‑M2/38‑1 (MQ=255) ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt > 2:590911‑M2/78‑115 (MQ=255) ggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt > 2:590999‑M2/78‑115 (MQ=255) ggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGa > 2:701729/1‑150 (MQ=255) gttggcccggtagggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTgcgc < 2:478028‑M2/12‑1 (MQ=255) cTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGCGCCACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTga < 2:169739/150‑1 (MQ=255) gCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc > 1:528325/1‑119 (MQ=255) gCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc < 2:528325/119‑1 (MQ=255) cAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGt < 1:352304/102‑1 (MQ=255) cAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGt > 2:352304/1‑102 (MQ=255) gcATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTc < 1:409510/150‑1 (MQ=255) | CAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTC > NC_002947/5545584‑5545817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |