| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1487013 = | 23 (0.420) | 13 (0.300) | 9/220 | 4.2 | 44.8% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1487103 = | 14 (0.320) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGC > NC_002947/1486864‑1487160 | gTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGACCGTCGAG‑TGACTGGAGTTCAGCCGTGTGACACGCAGTTATCGAACAAAATTGTTCCTCTGCCATTTCCTGCATTGATGCTGTTTGGGCTGCGCGGCAg < 1:1287107/150‑1 (MQ=255) gCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGTCTGCGTCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCAAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTcgc < 1:1269446/150‑1 (MQ=255) cGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTcgcg < 2:727247/150‑1 (MQ=255) gAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCACAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCtaacagc < 2:1294325/150‑7 (MQ=255) aaCCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCggg < 1:1025252/150‑1 (MQ=255) cGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGTAGGCCGAGCCGGAT‑GACTTCTTCGACCGGCCGACCAGTGACTGGACCAAGTTGTTTTTTATTTAGATTCTGCATTGATGCTGTTTGGGCGGCGCGGCAGCCCTTCGCGGGCAc < 1:155434/150‑1 (MQ=255) gAGCAGGCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGTGCTGCGCGGCAGCCTTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGa < 1:171777/150‑1 (MQ=255) ggCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCACTTCGCGGGCACGCCCTTTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTg < 2:13992/150‑1 (MQ=255) gCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCAAAGGTTTAGCGCTGGCttt < 2:578189/141‑1 (MQ=255) gCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCAAAGGTTTAGCGCTGGCttt > 1:578189/1‑141 (MQ=255) cgcgCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGt < 2:1234841/150‑1 (MQ=255) t‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt < 1:1160807/150‑1 (MQ=255) t‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt < 1:1275433/150‑1 (MQ=255) cttcttCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtg < 2:845380/146‑1 (MQ=255) cttcttCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtg > 1:845380/1‑146 (MQ=255) tcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGTGCGGCAGCCCTTCGCGGGCACGCCCGTTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCTTAATTCCTGTGGGAGCgg < 2:605335/150‑1 (MQ=255) ccGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcc < 2:391895/135‑1 (MQ=255) ccGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcc > 1:391895/1‑135 (MQ=255) ttgttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGcc > 1:588492/1‑150 (MQ=255) aTTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTAAAAACCTGCGTAATTCATGTGGGAGCGTGCGTGCCCGCCAAGGGCCGCAACGCGGCCCTGGGATTATTTCTCTTCctgg > 1:413700/1‑150 (MQ=38) aTGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTg > 2:1122654/1‑68 (MQ=255) aTGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTg < 1:1122654/68‑1 (MQ=255) cAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggcggc > 1:245356/1‑150 (MQ=255) | GTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAT‑GACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGC > NC_002947/1486864‑1487160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |