New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4075662 = | 34 (0.110) | 21 (0.100) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA |
18/190 | 18.4 | 20.7% | intergenic (‑204/+237) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
? | NC_002947 | 5545674 = | 208 (0.660) | intergenic (‑766/+111) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
Rejected: Coverage evenness skew score above cutoff. |
AAGGCTGTGACATCCCCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4075810‑4075662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGC > NC_002947/5545674‑5545731 ||||||||||||||||||||||||||||||||||||||||||||||||| AAGGCTGTGACATCCCCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑C < 2:7045336/150‑1 AGGCTGTGACATCCCCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CT < 1:6292286/150‑1 GCTGTGACATCCCCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCTGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTT < 2:3027827/150‑1 ctGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCA < 1:5953763/148‑1 ctGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCA < 1:5954423/148‑1 ATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGtac > 2:538857/1‑147 ATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGtac > 2:1165999/1‑147 ATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGat > 2:6424985/1‑148 TTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGA > 1:6428278/1‑150 TTTTAAATAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGtactg > 2:6724616/1‑145 TTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGtactgc > 1:4657999/1‑144 TGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGcggttt > 1:3021132/1‑144 AAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCAT < 1:4932346/89‑1 AAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCAT > 2:4932346/1‑89 GAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGA > 1:919176/1‑99 GAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGA < 2:919176/99‑1 AAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGAT < 1:7148596/123‑1 AAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGAT > 2:7148596/1‑123 AAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGT > 1:831177/1‑85 AAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGT < 2:831177/85‑1 GCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA > 2:6325321/1‑108 GCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA < 1:6325321/108‑1 GTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTAC < 1:2013219/124‑1 GTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTAC > 2:2013219/1‑124 TTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGA > 1:3955775/1‑115 TTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTCCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGA < 2:3955775/115‑1 gtCCGGTAGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACAC > 2:5110579/3‑68 gtCCGGTAGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACAC < 1:5110579/66‑1 CCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACAC < 2:5294919/50‑1 CCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACAC > 1:5294919/1‑50 ||||||||||||||||||||||||||||||||||||||||||||||||| AAGGCTGTGACATCCCCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4075810‑4075662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGC > NC_002947/5545674‑5545731 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |