| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,312,765 | 0 | G | . | 44.4% | ‑5.8 / 10.8 | 10 | intergenic (‑36/+678) | PP_16SG/msrQ | 16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/4); new base . (0/4); total (1/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.02e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTT‑TTAAGAAACCCTAAACTTGGCTCAGCAATCTCAAATGACTATGTGATTTCTCGCATGGTCACTTGTGATGCTGATAATCTTTTTGACTATCAGTC > NC_002947/5312620‑5312855 | acgccgaGGCATGACGCCCCCGTCCGACGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTT‑TTAAGAAAc < 2:2945790/144‑1 (MQ=1) cTAGGTATTACTCACCCGTCCGCCGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTTCTTAA‑AAAcccaa < 1:1351389/150‑3 (MQ=1) cTAGGCATTACTCACCCGTCCGCCGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTTCTTAA‑AAAcccaa < 1:6757126/150‑3 (MQ=0) ggCATTACTCACCCGTCCGCCGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTTCTTAA‑AAAcccaagca < 2:5384284/150‑6 (MQ=1) ggCATTACCCACCCGTCCGCCGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTTCTTAA‑AAAcccaagca < 1:2445096/150‑6 (MQ=1) acacGTCCGCCGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTT‑TTAAGAAACCCTAAACTTGGCTCAGc > 1:2073425/4‑150 (MQ=1) gattCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCGTCAGTTCAATACTGCTTGTGTTT‑TTAAGAAACCCTAAACTTGGCTCAGCAATCTCAAATGACt < 2:1891400/147‑1 (MQ=0) ggggCAAGCTCGCGTCATCCGCTCGACTTGCCTGTGTTAGGCCTGCCGCCAGCGTTCACTCTGAGTCATGATCGAACTCTTTGGTTCAATACCGGTTGGGTTT‑GTAAAATCCCCACTACGTGGCCCAGCAAAGTCTCGTGACTAtgtgtt < 2:2617893/147‑3 (MQ=0) ggtgaGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTT‑TTAAGAAACCCTAAACTTGGCTCAGCAATCTCAAATGACTATGTGATTGCTCGCATGGTCACTTGTGATGCTGATAATCtt < 2:923846/146‑1 (MQ=1) cccgCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCGTGGGTTT‑TTAAGAAACCCTAAACTTGGCTCAGCAATCTCAAATGACTATGTGATTTCTCGCATGGTCACTTGTGATGCTGATAATCTTTTTGACTATCAGTc < 2:2527410/147‑1 (MQ=1) | ATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCAAGGAGCAAGCTCCCGTCATCCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTCAATACTGCTTGGGTTT‑TTAAGAAACCCTAAACTTGGCTCAGCAATCTCAAATGACTATGTGATTTCTCGCATGGTCACTTGTGATGCTGATAATCTTTTTGACTATCAGTC > NC_002947/5312620‑5312855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |