Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,060,099 Δ1 bp 12.3% coding (242/891 nt) iciA → chromosome initiation inhibitor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,060,0990A.12.3% 162.6 / 18.9 57coding (242/891 nt)iciAchromosome initiation inhibitor
Reads supporting (aligned to +/- strand):  ref base A (24/26);  new base . (4/3);  total (28/29)
Fisher's exact test for biased strand distribution p-value = 7.06e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.04e-01

TTTCCCAGCGCATCAAGTTGCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAGGACCAGGAA  >  NC_002947/1059955‑1060247
                                                                                                                                                |                                                                                                                                                       
tttCCCAGCGCATCAAGTTGCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTAc                                                                                                                                                    <  1:707657/150‑1 (MQ=255)
   cccAGCGCATCAAGTTGCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCgg                                                                                                                                                <  1:161239/150‑1 (MQ=255)
    ccAGCGCATCAAGTTGCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGgc                                                                                                                                               >  1:568567/1‑150 (MQ=255)
                 ttGCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCGGTACCTGgcgc                                                                                                                                             >  2:660850/1‑139 (MQ=255)
                 ttGCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCGGTACCTGgcgc                                                                                                                                             <  1:660850/139‑1 (MQ=255)
                   gCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAggg                                                                                                                                >  2:449235/1‑150 (MQ=255)
                   gCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAggg                                                                                                                                <  2:479821/150‑1 (MQ=255)
                     ttGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACTGTGGGCTGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCa                                                                                                                              >  1:146227/1‑150 (MQ=255)
                     ttGAGGCGCGGGACGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGAGCCAGGTACCGGCGCTGGACGAAGAGGGCa                                                                                                                              >  1:669340/1‑150 (MQ=255)
                          gcgcGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGACGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGgcgc                                                                                                                                             <  1:749795/130‑1 (MQ=255)
                          gcgcGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGgcgc                                                                                                                                             >  2:749795/1‑130 (MQ=255)
                            gcgGGTCGGCCAGACGGTGCCGGTACGGGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGa                                                                                                                       >  2:595761/1‑150 (MQ=255)
                                gTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGCGGGCATGCCGGAgcgc                                                                                                                   >  2:275472/1‑150 (MQ=255)
                                           ggTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGc                                                                                                        <  2:1099319/150‑1 (MQ=255)
                                            gTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGcc                                                                                                       >  2:892132/1‑150 (MQ=255)
                                            gTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGcc                                                                                                       >  2:816443/1‑150 (MQ=255)
                                             tGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGccc                                                                                                     <  2:125819/150‑1 (MQ=255)
                                                    aCGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGc                                                                                              <  1:533656/150‑1 (MQ=255)
                                                      gTGCCTCGCCGCCCGGCGCGACCGAAGGCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCg                                                                                            >  2:40158/1‑150 (MQ=255)
                                                       tGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGa                                                                                           >  2:200066/1‑150 (MQ=255)
                                                             gccgccCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCt                                                                                    >  2:747240/1‑150 (MQ=255)
                                                              ccgccCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTg                                                                                   <  1:459858/150‑1 (MQ=255)
                                                               cgccCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTgg                                                                                  <  1:557922/150‑1 (MQ=255)
                                                                  ccGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGa                                                                                                                                         <  2:1032730/94‑1 (MQ=255)
                                                                  ccGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGa                                                                                                                                         >  1:1032730/1‑94 (MQ=255)
                                                                            cGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGAt                                                                                          <  1:613480/130‑1 (MQ=255)
                                                                            cGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGAt                                                                                          >  2:613480/1‑130 (MQ=255)
                                                                             gAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGcc                                                                    >  2:255538/1‑150 (MQ=255)
                                                                              aaGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCg                                                                   <  1:255538/150‑1 (MQ=255)
                                                                                  cGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGgcgc                                                               <  1:200066/150‑1 (MQ=255)
                                                                                   ggCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGAAGGAGAGGGCATGCCGGAGCGCCTCAGGATCGTCCTCAACGGCGATAGCCTGGCCACCTGGTGGGCCGGcgcg                                                              >  1:870583/1‑150 (MQ=255)
                                                                                       gccAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGttg                                                          <  2:568567/150‑3 (MQ=255)
                                                                                       gccAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTgg                                                          <  1:595761/150‑1 (MQ=255)
                                                                                          aGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCa                                                       >  2:532139/1‑150 (MQ=255)
                                                                                           gCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCaa                                                      >  1:1057705/1‑150 (MQ=255)
                                                                                             tACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGc                                                                     >  1:355799/1‑133 (MQ=255)
                                                                                             tACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGc                                                                     <  2:355799/133‑1 (MQ=255)
                                                                                                    ccATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTgcgc                                             >  1:369350/1‑150 (MQ=255)
                                                                                                     cATGTGCAGCAGTTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGca                                            >  1:341983/1‑150 (MQ=255)
                                                                                                             gcagGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAACAGGCGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGaa                                    <  1:449235/150‑1 (MQ=255)
                                                                                                                ggTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGt                                 <  2:369350/150‑1 (MQ=255)
                                                                                                                  tGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGACTTCTTCTGCGCACAACAGAACGTGc                               <  1:766666/150‑1 (MQ=255)
                                                                                                                       cTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTgacc                          <  1:892132/150‑1 (MQ=255)
                                                                                                                                 gcgGCCGGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGACTGAGCATCGCCCTAAACGAAGATAGCCTGGCCACCTAGTAGGTCGTCGCAGTTGGGAAGTGCAGCGGACAGCAGAACGGTCTGAGCGACCtggtgg                >  1:777168/1‑150 (MQ=255)
                                                                                                                                   gACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCCGTGGGCAACTTCTGCGCACAACACAACGTGCTGACCGACCTGGTGGtt              <  2:669340/150‑1 (MQ=255)
                                                                                                                                   gACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGCAGGAGGTGTG‑‑TCGCCTCACAATTCGGGTTGTTCTGTCCACCGGTTGGTCCGGCGCGGTGGGCAACTTCTGCTCACAACAGAACGTGCTGACCGACCTGGTGGtt              <  1:275472/150‑1 (MQ=255)
                                                                                                                                     ccTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGa            >  1:834582/1‑150 (MQ=255)
                                                                                                                                       tccAGCGCCGGTACCTGGCGCTGCACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAgg          >  2:343037/3‑150 (MQ=255)
                                                                                                                                       tccAGCGCCGGTACCTGGCGCTGCACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAgg          <  1:343037/148‑1 (MQ=255)
                                                                                                                                        gCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCt                              <  1:41111/129‑1 (MQ=255)
                                                                                                                                        gCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCt                              >  2:41111/1‑129 (MQ=255)
                                                                                                                                        ccAGCGCCGGTACCTGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAGGa         >  2:1048770/2‑150 (MQ=255)
                                                                                                                                         cAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAGGAc        <  1:40158/150‑1 (MQ=255)
                                                                                                                                          aGCGCCGGTACCTGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACGACAGAACGTGCTGACCGACCtggtgg                >  2:645498/1‑141 (MQ=255)
                                                                                                                                          aGCGCCGGTACCTGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCtggtgg                <  1:645498/141‑1 (MQ=255)
                                                                                                                                            cgcCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAGGACCAg     <  1:730198/150‑1 (MQ=255)
                                                                                                                                               cAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAGGACCAGGaa  <  1:816443/150‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                       
TTTCCCAGCGCATCAAGTTGCTTGAGGCGCGGGTCGGCCAGCCGGTGCTGGTACGTGCCTCGCCGCCCGGCGCGACCGAAGTCGGCCGCCAGCTACTCAACCATGTGCAGCAGGTGCGCCTGCTCGAACGCGACCTGCAGCGCCAGGTACCGGCGCTGGACGAAGAGGGCATGCCGGAGCGCCTGCGCATCGCCCTCAACGCCGATAGCCTGGCCACCTGGTGGGCCGGCGCGGTGGGCAACTTCTGCGCACAACAGAACGTGCTGACCGACCTGGTGGTTGAGGACCAGGAA  >  NC_002947/1059955‑1060247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: