| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,567,124 | Δ1 bp | 8.3% | coding (847/879 nt) | PP_2250 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,567,124 | 0 | G | . | 8.3% | 145.0 / 8.6 | 48 | coding (847/879 nt) | PP_2250 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (21/23); new base . (2/2); total (23/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 | |||||||||||
GGAGGGCGCAGCGCGCTCATGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAG > NC_002947/2566975‑2567269 | ggagggCGCAGCGCGCTCATGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCg > 1:576388/1‑150 (MQ=255) aTGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCgg > 2:442594/1‑150 (MQ=255) tctcgcgGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACGGACGTTGCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGc < 2:1190051/147‑1 (MQ=255) aCGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCtg < 1:893062/150‑1 (MQ=255) gcgGTGCGGGGCCTATCGACGGAGCTATCGGTTTGAGGGGTAAAAGGTTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGTAGCGGCtaga > 1:1190051/1‑147 (MQ=255) gcgGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCtgtt < 2:932533/150‑1 (MQ=255) tGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGttt < 1:1045559/150‑1 (MQ=255) gggCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTgcgc < 2:662333/150‑1 (MQ=255) gCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGACCGCGCCGCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCca > 1:73507/1‑150 (MQ=255) tATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGTAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAg < 1:131288/150‑1 (MQ=255) tATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTGGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAg > 2:808828/1‑150 (MQ=255) cGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGc < 1:660524/150‑1 (MQ=255) atCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAgg > 2:795296/1‑138 (MQ=255) atCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAgg < 1:795296/138‑1 (MQ=255) atCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGc > 2:52777/1‑150 (MQ=255) cGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAg < 2:370769/150‑1 (MQ=255) tAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCcaca > 1:397522/1‑122 (MQ=255) tAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCcaca < 2:397522/122‑1 (MQ=255) aaaaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTg < 1:52777/150‑1 (MQ=255) aaaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGc > 1:827577/1‑150 (MQ=255) aaaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGc > 1:847318/1‑150 (MQ=255) aGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCgt < 2:643881/150‑1 (MQ=255) aGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCgt < 2:576388/150‑1 (MQ=255) aTTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGc < 1:485766/146‑1 (MQ=255) aTTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGc > 2:485766/1‑146 (MQ=255) tGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACgg > 1:1096657/1‑150 (MQ=255) cTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGaa > 2:271193/1‑150 (MQ=255) gggAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGC‑TGCACGCctgctgat > 1:1050986/1‑80 (MQ=38) gggAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGC‑TGCACGCctgctgat < 2:1050986/82‑3 (MQ=38) gggAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCAGACTGAAAAGCAGGCGTGCA‑ACCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTcc > 1:750399/1‑150 (MQ=255) ggAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCa < 1:179306/150‑1 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCTACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAg < 2:496779/150‑1 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTcc > 2:468440/1‑148 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTcc < 1:468440/148‑1 (MQ=255) acacacGTTTCGACGGACGGCATTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGa < 1:170228/150‑1 (MQ=255) aGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGC‑TGCACGCctgctga > 1:695742/1‑66 (MQ=37) aGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGC‑TGCACGCctgctga < 2:695742/67‑2 (MQ=37) gacggacgGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTgct > 1:71348/1‑148 (MQ=255) acggacggCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGcc < 2:750399/150‑1 (MQ=255) ggacggCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCcag > 1:672077/1‑150 (MQ=255) acggCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCcagca > 2:1032473/1‑150 (MQ=255) gTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg < 1:442594/150‑1 (MQ=255) tCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc < 2:472160/150‑1 (MQ=255) tCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc > 2:1014433/1‑150 (MQ=255) tCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc > 1:472160/1‑150 (MQ=255) ggATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCca > 2:579871/1‑136 (MQ=255) ggATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCca < 1:579871/136‑1 (MQ=255) ctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCAACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAg < 2:750752/150‑1 (MQ=255) agGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCAAGCAGCCGGGCGACCCGCGACAACGGCAGATCTCCCCAg > 2:1152845/1‑150 (MQ=255) | GGAGGGCGCAGCGCGCTCATGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAG > NC_002947/2566975‑2567269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |