| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,579,695 | Δ1 bp | 7.7% | coding (1062/1095 nt) | PP_2260 → | glycerol‑phosphate ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,579,695 | 0 | G | . | 7.7% | 156.2 / 8.2 | 52 | coding (1062/1095 nt) | PP_2260 | glycerol‑phosphate ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (20/28); new base . (2/2); total (22/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.71e-01 | |||||||||||
TCAGAAACATTTCTGCATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGG > NC_002947/2579546‑2579834 | tCAGAAACATTTCTGCATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAg > 1:58050/1‑150 (MQ=255)tCAGAAACATTTCTGCATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATACCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAg > 1:322103/1‑150 (MQ=255) aGAAACATTTCTGCATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGc > 1:775036/1‑150 (MQ=255) tttCTGCATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCgggg < 2:775036/150‑1 (MQ=255) tgtgCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCA‑GCCCCGGGGcctgc < 1:12584/146‑5 (MQ=255) tgtgCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCA‑GCCCCGGGGcctgc > 2:12584/1‑142 (MQ=255) gtgCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATACCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAg < 2:322103/150‑1 (MQ=255) tgCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAgg < 2:523214/150‑1 (MQ=255) aCGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCTCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGGCAGGCgaggg > 1:297737/1‑149 (MQ=255) gAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCA‑GCCCCGGGGcctgcac < 1:1097376/138‑7 (MQ=255) gAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCA‑GCCCCGGGGcctgcac > 2:1097376/1‑132 (MQ=255) aCTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGt < 1:155756/150‑1 (MQ=255) cTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCTCAGGGGTAGCGCTAGGCATGGAGAGGGTg < 2:676857/150‑1 (MQ=255) tGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGa > 1:7939/1‑150 (MQ=255) tGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGa > 1:989212/1‑150 (MQ=255) gcgcATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGAGCAAGGCCAGGAGAGGTGGATg > 2:821964/1‑150 (MQ=255) tgctgcACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCgg < 2:140710/114‑1 (MQ=255) tgctgcACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCgg > 1:140710/1‑114 (MQ=255) tgctgcACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAAt < 2:7939/150‑1 (MQ=255) gctgcACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTgcgc < 2:174696/121‑1 (MQ=255) gctgcACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTgcgc > 1:174696/1‑121 (MQ=255) gcACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGc > 2:723338/1‑150 (MQ=255) aCCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCt < 2:224623/150‑1 (MQ=255) cGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCggg > 2:475256/1‑102 (MQ=255) cGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCggg < 1:475256/102‑1 (MQ=255) cGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAg > 2:1110785/1‑150 (MQ=255) cGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAg > 1:1021533/1‑150 (MQ=255) ggggTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGc < 1:387414/150‑1 (MQ=255) ggTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTg < 1:723338/150‑1 (MQ=255) ttCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGCGTGGGGGCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGgc < 1:821964/150‑1 (MQ=255) tCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGgcg < 2:58050/150‑1 (MQ=255) tACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCgag > 2:725354/1‑104 (MQ=255) tACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCgag < 1:725354/104‑1 (MQ=255) ccAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGATGGGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTAc > 1:571740/1‑150 (MQ=255) ccAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTAc < 2:527776/150‑1 (MQ=255) cAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGGGCACAGTTACa > 2:351164/1‑150 (MQ=255) gCCGATACGCGTGTTCTGCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGccgcca < 1:367756/146‑1 (MQ=255) gCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGccgcca > 2:367756/1‑146 (MQ=255) gtgtTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAgg > 1:182636/1‑150 (MQ=255) aTCCCCACGCACAAGCAGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGCGGGTGATGGCCGAAATCCGCCTGCGCCAACTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCACACt > 2:300049/1‑150 (MQ=255) ccACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCTCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCAGAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGc > 2:573601/1‑150 (MQ=255) aCGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGcagg > 1:435407/1‑109 (MQ=255) aCGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGcagg < 2:435407/111‑3 (MQ=255) aCGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGccgccagcccgcca < 2:307980/132‑1 (MQ=255) aCGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGccgccagcccgcca > 1:307980/1‑132 (MQ=255) cGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCt < 1:171682/150‑1 (MQ=255) ccacaAGCTGTTCGTTTTCGACAGCTCCGGGCTGTTGGTGCAGCCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGccccg < 1:181730/149‑3 (MQ=255) aaGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCCGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTgcacg < 1:1093894/150‑1 (MQ=255) cGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGaa < 1:1110785/150‑1 (MQ=255) gTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACANCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGaaa < 1:351164/150‑2 (MQ=255) tttCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACAt < 2:1021533/150‑1 (MQ=255) ttCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTCCATCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACAtg < 1:30454/150‑1 (MQ=255) gcCGTGCTCTTGGTGCAGGCCCCGGGTCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCGAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGGGTGGGAAc < 2:241918/150‑1 (MQ=255) tGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCgg < 2:954724/150‑1 (MQ=255) | TCAGAAACATTTCTGCATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGCTGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGG > NC_002947/2579546‑2579834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |