| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,340,627 | Δ1 bp | 10.4% | coding (244/1587 nt) | ybiT ← | ABC‑F family ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,340,627 | 0 | T | . | 10.4% | 140.6 / 11.4 | 48 | coding (244/1587 nt) | ybiT | ABC‑F family ATPase |
| Reads supporting (aligned to +/- strand): ref base T (21/22); new base . (3/2); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.98e-01 | |||||||||||
CGGTGTAGCCGTCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACTTGCCGCAACCGTTGGCGCCGATC > NC_002947/3340480‑3340775 | cggTGTAGCCGTCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCa < 1:932389/150‑1 (MQ=255) gtAGCCGTCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGt < 2:1070907/150‑1 (MQ=255) tAGCCGTCCATTTCGGTGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTg < 2:279123/150‑1 (MQ=255) gTCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACTGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTGATCGA‑CACGGTGatc > 2:581670/1‑146 (MQ=255) gTCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACTGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTGATCGA‑CACGGTGatc < 1:581670/148‑3 (MQ=255) gTCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTc > 2:409070/1‑150 (MQ=255) tCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTGATCGA‑CACGGTGatcatg < 1:162867/150‑6 (MQ=255) ccATTTCGGCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCt < 1:20491/150‑1 (MQ=255) tCGGCGAATTCTTTTTCCCCCTCGGCGCCGGCCATGCCGTCTTCTTCGGTCATTCCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCGGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAg < 1:535679/150‑1 (MQ=255) ggCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGt > 1:989075/1‑135 (MQ=255) ggCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGt < 2:989075/135‑1 (MQ=255) ggTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTc < 1:1170291/150‑1 (MQ=255) ccAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGgc < 1:668085/150‑1 (MQ=255) ggCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCtt > 2:883876/1‑150 (MQ=255) ccATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGc > 1:1158133/1‑150 (MQ=255) tGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCggg > 1:687174/1‑150 (MQ=255) tttCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGc > 1:476134/1‑100 (MQ=255) tttCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGc < 2:476134/100‑1 (MQ=255) cGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTg > 1:950769/1‑150 (MQ=255) gCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGc < 1:524462/150‑1 (MQ=255) gCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACt > 1:899083/1‑96 (MQ=255) gCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACt < 2:899083/96‑1 (MQ=255) aGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCgg > 1:880891/1‑150 (MQ=255) aTACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGc > 2:404197/1‑150 (MQ=255) gTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAg < 1:409070/150‑1 (MQ=255) cACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGt < 2:687174/150‑1 (MQ=255) cTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGa < 2:1095447/150‑1 (MQ=255) cTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCCTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGa < 1:615270/150‑1 (MQ=255) tttGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAg < 2:1158133/150‑1 (MQ=255) tttGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAg > 2:414500/1‑150 (MQ=255) aCTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGa > 2:1202534/1‑106 (MQ=255) aCTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGa < 1:1202534/106‑1 (MQ=255) aCTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGAtt > 2:376147/1‑150 (MQ=255) tttCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGAtttt > 2:387838/1‑150 (MQ=255) ttCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTc > 1:547208/1‑150 (MQ=255) aGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAg > 2:1055961/1‑150 (MQ=255) cTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTTACCGCCGAGGATTTTCATGAAGGt < 2:950769/150‑1 (MQ=255) gTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACtt < 1:376147/150‑1 (MQ=255) gCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTACGCTAACTGGTCCTGACGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCCGACGGCTCCAGGTCACCCCCGAGGATTTTCCTGAACGTCGACTTGcc > 1:151954/1‑150 (MQ=255) ggaattCACCGTGATCGA‑CACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACTTGCGGCa > 1:123050/6‑150 (MQ=255) cATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAAc < 1:977197/43‑1 (MQ=255) cATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAAc > 2:977197/1‑43 (MQ=255) aattCACCGTGATCGA‑CACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACTTGCCGCAAc > 2:770135/4‑150 (MQ=255) tCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCgg < 2:1030533/73‑1 (MQ=255) tCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCgg > 1:1030533/1‑73 (MQ=255) aCCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACTTGCCGCAACCGTTg < 2:880891/150‑1 (MQ=255) cGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACTTGCCGCAACCGTTGgc > 1:476716/1‑150 (MQ=255) aTCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACTTGCCGCAACCGTTGGCGCCGATc > 2:1146392/1‑150 (MQ=255) | CGGTGTAGCCGTCCATTTCGGCGAATTCGGTTTCCAGCTCGGCGACGGCCATGCCGTCTTCTTCGGTCATTTCCGGCAGCGAGTAGATACGGTCACGCTCGGCTTTGACTTTCCACAGCTGGCCGTGGCCCATGATCACCGTG‑TCGATCACGGTGAATTCCTCGTAGGCGAACTGGTCCTGGCGCAGCTTGCCCAGGCGGGTATTCGGCTCGAGCATGACCTGGCCTGCGGACGGCTCCAGGTCACCGCCGAGGATTTTCATGAAGGTCGACTTGCCGCAACCGTTGGCGCCGATC > NC_002947/3340480‑3340775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |