Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 924,324:1 | +A | 6.8% | coding (872/2169 nt) | PP_0804 ← | protein secretion ABC transporter permease/ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 924,324 | 1 | . | A | 6.8% | 229.8 / 10.8 | 59 | coding (872/2169 nt) | PP_0804 | protein secretion ABC transporter permease/ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base . (29/26); new base A (2/2); total (31/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 |
ACCGTGCCAGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCACCCGCAGGTCGG > NC_002947/924181‑924462 | aCCGTGCCAGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGc < 2:963399/150‑1 (MQ=255) cGTGCCAGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTg > 2:1086455/1‑150 (MQ=255) tGCCAGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACATCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGa < 1:280843/150‑1 (MQ=255) cAGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCGAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGt < 1:242292/150‑1 (MQ=255) cAGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGt > 1:156072/1‑150 (MQ=255) aGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTg > 1:7463/1‑150 (MQ=255) gcgcCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTAAGACGCGGAGCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGAt > 2:947626/1‑150 (MQ=255) cTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAgg > 1:25455/1‑150 (MQ=255) gcaagcaaCCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCgg > 1:489874/1‑150 (MQ=255) caagcaaCCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGa < 1:303412/150‑1 (MQ=255) aagcaaCCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGTCCAGCACCGCGA‑CGGTGCTggcc > 1:1097800/1‑131 (MQ=255) aagcaaCCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGTCCAGCACCG‑CGACGGTGCTggcc < 2:1097800/133‑3 (MQ=255) aCCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACt > 2:729179/1‑150 (MQ=255) cagcaCCATGGCCAGCAGCAAGACCTCCGGAATGAACAGCAGTACGCCGCCGATCAGCCAGAACAACGAACA‑GAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTc < 1:209455/150‑1 (MQ=255) agcaCCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTcg > 2:445248/1‑150 (MQ=255) aCCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCgcgc < 2:25455/150‑1 (MQ=255) cATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCaa > 1:637403/1‑150 (MQ=255) aTGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAAc < 2:637403/150‑1 (MQ=255) cagcagCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCga > 1:949909/1‑150 (MQ=255) cagcGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGAt < 1:1111209/150‑1 (MQ=255) cgcgACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGaa < 1:877582/150‑1 (MQ=255) aGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCg > 1:238864/1‑150 (MQ=255) gCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAAc < 2:1052680/143‑1 (MQ=255) gCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGAAGGCAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAAc > 1:1052680/1‑143 (MQ=255) cGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGt < 1:729179/150‑1 (MQ=255) cGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGt > 1:242313/1‑150 (MQ=255) ggATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTgg > 1:111459/1‑150 (MQ=255) gATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGa < 1:352407/150‑1 (MQ=255) aTGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGAc < 1:356296/150‑1 (MQ=255) acacCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTg > 1:610198/1‑83 (MQ=255) acacCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTg < 2:610198/83‑1 (MQ=255) acacCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTgg < 2:292492/150‑1 (MQ=255) ccAGTACGCCGCCGATCAGCCACAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCTAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCCGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGcc < 1:360404/150‑1 (MQ=255) tACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCAc > 2:539243/1‑150 (MQ=255) gccgccGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGa < 1:539243/150‑1 (MQ=255) gCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTgcgcaggc > 1:238392/1‑150 (MQ=255) gAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTgcgcaggcgcag < 2:242313/150‑1 (MQ=255) aaC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGcgcaggcgcagg < 2:949909/150‑1 (MQ=255) gaacagCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTggg < 2:1079175/114‑1 (MQ=255) gaacagCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTggg > 1:1079175/1‑114 (MQ=255) aacagCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAg < 2:156072/150‑1 (MQ=255) agGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAgg > 2:158198/1‑150 (MQ=255) gaaCGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCt > 2:406246/1‑150 (MQ=255) cGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCAc > 1:1007144/1‑150 (MQ=255) ggCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAAAGAGCCGGTGGa < 2:697691/92‑1 (MQ=255) ggCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAAAGAGCCGGTGGa > 1:697691/1‑92 (MQ=255) tCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGt > 2:126389/1‑83 (MQ=255) tCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGt < 1:126389/83‑1 (MQ=255) tCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCa < 2:562505/133‑1 (MQ=255) tCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCa > 1:562505/1‑133 (MQ=255) gtccAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGc > 1:833090/3‑117 (MQ=255) gtccAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGc < 2:833090/115‑1 (MQ=255) gtccAGCACCGCGA‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCACCCGCAGGTc > 2:1140587/3‑150 (MQ=255) gtccAGCACCG‑CGACGGTGCTGGCCGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTgcgcag > 1:942782/3‑108 (MQ=255) gtccAGCACCG‑CGACGGTGCTGGCCGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTgcgcag < 2:942782/106‑1 (MQ=255) gCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCACCCGCAGGTCg > 2:623078/1‑150 (MQ=255) ccAGCACCG‑CGACGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCACCCGCAGGTCgg > 1:550967/1‑150 (MQ=255) aCCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCAccc > 2:1120131/1‑136 (MQ=255) aCCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCAccc < 1:1120131/136‑1 (MQ=255) | ACCGTGCCAGGCGCCTTTGTGCAAGCAACCCGGGCAGCACCATGGCCAGCAGCGCGACCAGCGGGATGAACACCAGTACGCCGCCGATCAGCCAGAAC‑ACGAACAGGAACAGCAGGAAGAACGGCAGGTCGGCCAGCACCGTCG‑CGGTGCTGGACGTGATCAGGTCGCGGATCGACTCCAGCTCGCGCAACTGCGAGATGAACGAGCCGGTGGACTTGGGCCGCACCGAGTTGCGCAGGCGCAGGGCATGGCCGTAGACCAGGTCGCTCACCCGCAGGTCGG > NC_002947/924181‑924462 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |