| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,491,149:1 | +A | 8.8% | coding (805/1902 nt) | cysNC → | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,491,149 | 1 | . | A | 8.8% | 202.8 / 15.3 | 57 | coding (805/1902 nt) | cysNC | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase |
| Reads supporting (aligned to +/- strand): ref base . (23/29); new base A (2/3); total (25/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.35e-01 | |||||||||||
GTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATCGAC > NC_002947/1491004‑1491289 | gTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCGGTGGCg‑tggt < 1:249106/150‑1 (MQ=255) aCGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCA‑CGCCACTGGCGATGGTGc < 1:532244/150‑1 (MQ=255) gCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAg < 1:563310/150‑1 (MQ=255) gACGCTGATTGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTTCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGa < 2:836854/150‑1 (MQ=255) gACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGa < 1:151375/150‑1 (MQ=255) aCGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGAc < 1:159499/150‑1 (MQ=255) cTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACgag > 1:806397/1‑150 (MQ=255) tGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACgaga > 2:837094/1‑150 (MQ=255) gATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGAt > 1:400214/1‑150 (MQ=255) aTGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCTTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGAtt < 2:469985/150‑1 (MQ=255) gAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCCGTGTGGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTc < 1:30646/150‑1 (MQ=255) aaTCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGt < 2:500574/150‑1 (MQ=255) aTCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGtg > 2:691603/1‑150 (MQ=255) cTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGtgctg > 1:670696/1‑150 (MQ=255) tCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tggtg < 2:295800/122‑1 (MQ=255) tCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tggtg > 1:295800/1‑122 (MQ=255) cGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGcc < 1:195246/150‑1 (MQ=255) gAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGTGCACCA‑CGCCACTGGCGATGGTGccc > 2:663220/1‑121 (MQ=255) gAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGTGCACCA‑CGCCACTGGCGATGGTGccc < 1:663220/123‑3 (MQ=255) gtttCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCgg < 2:720910/147‑1 (MQ=255) gTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGAt > 1:43149/1‑125 (MQ=255) gTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGAt < 2:43149/125‑1 (MQ=255) gTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGagc > 2:473046/1‑150 (MQ=255) tttCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACaaa > 2:1112306/1‑113 (MQ=255) tttCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACaaa < 1:1112306/113‑1 (MQ=255) gCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGACTAATCTGCTGCCGTCGGGCAAGAGCAGCCgg < 1:337885/150‑1 (MQ=255) aCCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCa > 2:1138937/1‑150 (MQ=255) ccGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAg > 1:584170/1‑104 (MQ=255) ccGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAg < 2:584170/104‑1 (MQ=255) ccGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCCGCCGGGTaaa < 2:806397/150‑1 (MQ=255) cGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAg > 1:133389/1‑150 (MQ=255) gCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGt > 2:988630/1‑150 (MQ=255) ccAACTTCACCGACCTCCATTTCCCCTTTCACTACGTTAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGt < 1:566881/149‑1 (MQ=255) cTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTc > 1:205925/1‑112 (MQ=255) cTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTc < 2:205925/112‑1 (MQ=255) ccGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCa < 1:988630/150‑1 (MQ=255) aCCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCt > 1:842090/1‑150 (MQ=255) ccTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTa < 1:473046/150‑1 (MQ=255) ccGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTg > 2:233921/1‑91 (MQ=255) ccGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTg < 1:233921/91‑1 (MQ=255) cGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAAc < 2:800414/150‑1 (MQ=255) cGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGc > 2:1165541/1‑150 (MQ=255) cGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGCAAAACGc < 2:842090/150‑1 (MQ=255) gTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCt > 2:977914/1‑150 (MQ=255) tCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTATCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCCGAGTCACCGACTAAGGCGAACTGGAAAACGCTg > 1:509565/1‑150 (MQ=255) cAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTgg < 2:400214/150‑1 (MQ=255) aaCCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGc > 1:1058413/1‑150 (MQ=255) gTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccag < 1:35088/150‑1 (MQ=255) ccAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggcc > 2:978532/1‑150 (MQ=255) cAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tg < 1:846882/46‑1 (MQ=255) cAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tg > 2:846882/1‑46 (MQ=255) aaCCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggccag < 1:837094/150‑1 (MQ=255) tGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCg > 2:896433/1‑150 (MQ=255) gAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGt < 1:1127005/150‑1 (MQ=255) gcgGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGa < 2:133389/150‑1 (MQ=255) gCACCA‑CGCCACTGGCGATGGTGCCCAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggc > 1:609364/1‑122 (MQ=255) gCACCA‑CGCCACTGGCGATGGTGCCCAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggc < 2:609364/122‑1 (MQ=255) atcATCGCCAGTGGAG‑TGGTGCACAAAAGTGACGATATTGTCCTGCTCCCGTCTGGCAAGATCAGCCGGGTCAACTCCATCGTCACCCACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCACGCCGTGACCCTGACCATGGAAGACgag < 2:462719/148‑1 (MQ=255) aCCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCgg > 1:1143190/1‑69 (MQ=255) aCCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCgg < 2:1143190/69‑1 (MQ=255) gCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATCGAc > 1:885708/1‑150 (MQ=255) gCCAGTGGCG‑GGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGACCGAc < 1:896433/150‑1 (MQ=255) | GTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATCGAC > NC_002947/1491004‑1491289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |