New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 63729	48 (1.060)	4 (0.090)	4/232	NT	7.4%	coding (748/858 nt)	PP_0054	membrane protein
	?	NC_002947	= 63769	55 (1.300)					coding (788/858 nt)	PP_0054	membrane protein

CCAACCTGCGCATGGCCAGCATCGTCTCCACCTCGCTGGCGGTGATTGCCCTGGTCTCTACCGGCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCATGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/63580‑63729 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgctgcAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACTGCGCCGACGGCAAACGGGGCGCCAACCTGCCAGTGCATGACGCCCGCAAGGCTGGCGCTGACCACACTGCCGGTAGAGACCAGGGCAA  <  NC_002947/63769‑63625                                                                                                                                                                                                                                                                                                         CCAACCTGCGCATGGCCAGCATCGTCTCCACCTCGCTGGCGGTGATTGCCCTGGTCTCTACCGGCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCATGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGC                                                                                                                                                   >  2:843653/1‑150                                                 CCCTGGTCTCTACCGGCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCATGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGA                                                                                                   <  1:843653/150‑1                                                          CTACCGGCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCATGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACT                                                                                          <  2:985052/150‑1                                                                                         GGGCGTCATGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAG                                                                                                       <  1:46139/106‑1                                                                                         GGGCGTCATGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAG                                                                                                       >  2:46139/1‑106                                                                                                                                                  GCTGCAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACTGCGCCGACGGCAAACGGGGCGCCAACCTGCCAGTGCATGACGCCCGCAAGGCTGGCGCTGACCACACTGCCGGTAGAGACCAGGGCAA  <  1:1195231/150‑1                                                                                                                                                    TGCAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACTGCGCCGACGGCAAACGGGGCGCCAACCTGCCAGTGC                                                      >  1:515384/1‑96                                                                                                                                                    TGCAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACTGCGCCGACGGCAAACGGGGCGCCAACCTGCCAGTGC                                                      <  2:515384/96‑1                                                                                                                                                      CAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACTGCGCCGACGGCAAACGGGGCGCCAACCTGCCAGTGCATGACGCCCGCAAGGCTGG                                   <  1:1029791/113‑1                                                                                                                                                      CAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACTGCGCCGACGGCAAACGGGGCGCCAACCTGCCAGTGCATGACGCCCGCAAGGCTGG                                   >  2:1029791/1‑113                                                                                                                                                                                                                                                                                                         CCAACCTGCGCATGGCCAGCATCGTCTCCACCTCGCTGGCGGTGATTGCCCTGGTCTCTACCGGCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCATGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/63580‑63729 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgctgcAGACGCGGCCCGGCCAATCTGGCTGCCAAAGGCCGCGCCAGCAGCAGACCGAGCACTGCGCCGACGGCAAACGGGGCGCCAACCTGCCAGTGCATGACGCCCGCAAGGCTGGCGCTGACCACACTGCCGGTAGAGACCAGGGCAA  <  NC_002947/63769‑63625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.