New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	363437 =	65 (1.440)	4 (0.090)	4/236	NT	6.4%	coding (49/966 nt)	lcdH	L‑carnitine dehydrogenase
	?	NC_002947	363457 =	56 (1.300)					coding (29/966 nt)	lcdH	L‑carnitine dehydrogenase

GCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAATCAAAACCTTCGCCGCCCTGGGTAGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/363590‑363437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCACGGCCGGTGCCATCCATCGCGTTGCCTGCTTCACGGGCAC  >  NC_002947/363457‑363605                                                                                                                                                                                                                                                                                                                 GCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAATCAAAACCTTCGCCGCCCTGGGTAGC                                                                                                                                                           >  1:1097921/1‑150    ACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAATCAAAACCTTCGCCGCCCTGGGTAGCGGC                                                                                                                                                        <  2:538805/150‑1                                                                                                                                  ACCTTCGCCGCCCTGGGTAGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAAC                                                                                                     >  1:1102328/1‑75                                                                                                                                  ACCTTCGCCGCCCTGGGTAGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAAC                                                                                                     <  2:1102328/75‑1                                                                                                                                     TTCGCCGCCCTGGGTAGCGGCGAAGGTTTTGATTTCAGTGATAAATGGCATAGCTGGTCCTCAGGGTAAAACACA                                                                                                  <  1:804264/75‑1                                                                                                                                     TTCGCCGCCCTGGGTAGCGGCGAAGGTTTTGATTTCAGTGATAAATGGCATAGCTGGTCCTCAGGGTAAAACACA                                                                                                  >  2:804264/1‑75                                                                                                                                                         CGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCACGGCCGGTGCCATCCATCGCGTTGCCTGCTTCACGGGCA   >  1:829013/1‑150                                                                                                                                                          GAAGGTTTTGATTTCAGTGATAAGGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCACGGCCGGTGCCATCCATCGCGTTGCCTGCTTCACGGGCAC  <  2:395679/150‑1                                                                                                                                                                                                                                                                                                                 GCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAATCAAAACCTTCGCCGCCCTGGGTAGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/363590‑363437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCACGGCCGGTGCCATCCATCGCGTTGCCTGCTTCACGGGCAC  >  NC_002947/363457‑363605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.