| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 499220 | 44 (0.980) | 4 (0.110) | 4/200 | NT | 9.3% | intergenic (+61/‑235) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 499259 | 43 (1.180) | intergenic (+100/‑196) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
GCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/499051‑499220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCA < NC_002947/499259‑499116 GCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTG > 2:954692/1‑150GCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTG > 2:1177988/1‑150 AAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGG < 2:380449/147‑1 AAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGCAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGG > 1:380449/1‑147 AGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGGTGGC‑ACGGTGAAGCAAGTACGCCATCGAGCACAATCTTATCTGCTTGCGACATACGAGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCAT < 1:1177988/150‑1 GACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATG > 1:76627/1‑150 CATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGAGGGAGCGGGCATGCCC < 2:660482/150‑1 AGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGT > 1:1146082/1‑105 AGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGT < 2:1146082/105‑1 GCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCA < 1:497810/138‑1 GCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCA > 2:497810/1‑138 AAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCG < 1:797770/118‑1 AAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCG > 2:797770/1‑118 GGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTT < 1:203845/150‑1 GGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAA < 1:909411/120‑1 GGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAA > 2:909411/1‑120 GCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCAC < 2:953951/150‑1 GGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAG < 1:606436/150‑1 CGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCc > 2:813499/1‑149 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTT < 1:594921/117‑1 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTT > 2:594921/1‑117 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGG > 2:1137800/1‑89 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGG < 1:1137800/89‑1 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCG < 1:57190/60‑1 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCG > 2:57190/1‑60 GCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTG‑AAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/499051‑499220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCA < NC_002947/499259‑499116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |