New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	619377 =	70 (1.550)	4 (0.090)	4/240	NT	5.9%	coding (624/1329 nt)	pfeS‑I	histidine kinase
	?	NC_002947	619400 =	59 (1.350)					coding (601/1329 nt)	pfeS‑I	histidine kinase

GTCACGCATGGCGTTGCCCCCGCACTGCTGGCCCTGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCCGCTGAACCGCCTGCGCGACCGCGCCGACGCCCTGCGGGCCGATGATCTGGACAGCCCCGC‑CCTGCCCCTGCAGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/619529‑619377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATGGGTCCAGGGTGTC  >  NC_002947/619400‑619548                                                                                                                                                                                                                                                                                                                 GTCACGCATGGCGTTGCCCCCGCACTGCTGGCCCTGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCCGCTGAACCGCCTGCGCGACCGCGCCGACGCCCTGCGGGCCGATGATCTGGACAGCCCCGC‑CCTGCCCCTGCAGGAG                                                                                                                                                          >  1:135918/1‑150  TCACGCATGGCGTTGCCCCCGCACTGCTGGCCCTGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCGGATGAACCGCCTGCGCGACCGCGCCGACGCGCTGCTGGCCGATGATCTGGACAGCCCCGC‑CCTGCCCCTGCAGGAGC                                                                                                                                                         >  2:739458/1‑150                                  CTGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCCGCTGAACCGCCTGCGCGACCGCGCCGACGCCCTGCGGGCCGATGATCTGGACAGCCCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCA                                                                                                                                              <  1:761380/129‑1                                  CTGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCCGCTGAACCGCCTGCGCGACCGCGCCGACGCCCTGCGGGCCGATGATCTGGACAGCCCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCA                                                                                                                                              >  2:761380/1‑129                                   TGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCCGCTGAACCGCCTGCGCGACCGCGCCGACGCCCTGCGGGCCGATGATCTGGACAGCCCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATC                                                                                                                                          <  1:180222/132‑1                                   TGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCCGCTGAACCGCCTGCGCGACCGCGCCGACGCCCTGCGGGCCGATGATCTGGACAGCCCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATC                                                                                                                                          >  2:180222/1‑132                                                                                                                                                       GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATGGGTCCAGGGT     <  2:629478/150‑1                                                                                                                                                          GGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATGGGTCCAGGGTGTC  >  1:885019/1‑150                                                                                                                                                                                                                                                                                                                 GTCACGCATGGCGTTGCCCCCGCACTGCTGGCCCTGCTGCTAGGCCTTGCGCTATACCGGCATCTTGTCGTGCCGCTGAACCGCCTGCGCGACCGCGCCGACGCCCTGCGGGCCGATGATCTGGACAGCCCCGC‑CCTGCCCCTGCAGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/619529‑619377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATGGGTCCAGGGTGTC  >  NC_002947/619400‑619548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.