New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	661518 =	57 (1.260)	8 (0.190)	7/234	NT	12.2%	intergenic (+25/+102)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	661599 =	61 (1.430)					intergenic (+106/+21)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein

CGTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/661672‑661518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgaTGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGC  >  NC_002947/661599‑661742                                                                                                                                                                                                                                                                                                             CGTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGT                                                                                                                                                       >  2:45426/1‑150  GTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTC                                                                                                                                                      <  1:1144314/150‑1  GTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTC                                                                                                                                                      <  1:212608/150‑1    TGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGC                                                                                                                                                    <  2:912648/150‑1                                GAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGT                                                                                                                                                       <  1:480930/119‑1                                GAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGT                                                                                                                                                       >  2:480930/1‑119                                                                         CATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCAC                                                                               >  2:750553/1‑150                                                                           TCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGCGTCGAGATGGGCCGCCCAGTGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCCCCCAACCCACCC                                                                             >  1:12314/1‑150                                                                                        CCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCC                                                                >  1:1003492/1‑150                                                                                          GCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGC                                                                 >  1:701910/1‑147                                                                                          GCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGC                                                                 <  2:701910/147‑1                                                                                               CACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCC                                                                                          >  2:1154308/1‑117                                                                                               CACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCC                                                                                          <  1:1154308/117‑1                                                                                                                                TCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCAT                        <  1:750553/150‑1                                                                                                                                                     GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGG   >  1:64948/1‑150                                                                                                                                                     GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCAT                        >  1:404818/1‑129                                                                                                                                                     GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCAT                        <  2:404818/129‑1                                                                                                                                                      TCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGC  <  2:140803/150‑1                                                                                                                                                                                                                                                                                                             CGTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/661672‑661518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgaTGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGC  >  NC_002947/661599‑661742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.