| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 688294 | 52 (1.150) | 3 (0.070) | 3/234 | NT | 5.8% | coding (1156/1182 nt) | ydgK | Bcr/CflA family multidrug resistance transporter |
| ? | NC_002947 | = 688338 | 48 (1.130) | coding (14/183 nt) | PP_5446 | hypothetical protein | |||||
GCAGCGCCTCGGCACTGATGGGCTGCGTGCAGTTCAGCGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/688139‑688294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccggcTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGCGCAACACTGACCACCAGCGCCCCGCACAGGCTGATCACGATTGCCATGGGCACCGCACTGCCATCATGCAGTAGCCCGACCAGCGC < NC_002947/688338‑688195 GCAGCGCCTCGGCACTGATGGGCTGCGTGCAGTTCAGCGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGA > 1:172223/1‑150GCAGCGCCTCGGCACTGATGGGCTGCGTGCAGTTCAGCGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGA > 1:726400/1‑150 GCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTC < 1:620898/150‑1 GGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGACCCGGC < 1:592351/90‑1 GGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGACCCGGC > 2:592351/1‑90 TGGTGGTCAGTGTTGCGCTGTTGACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGT > 1:452190/1‑81 TGGTGGTCAGTGTTGCGCTGTTGACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGT < 2:452190/81‑1 CCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGCGCAACACTGACCACCAGCGCCCCGCACAGGCTGATCACGATTGCCATGGGCACCGCACTGCCATCATGCAGTAGCCCGACCAGCGC < 2:1134602/150‑1 GCAGCGCCTCGGCACTGATGGGCTGCGTGCAGTTCAGCGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/688139‑688294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccggcTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGCGCAACACTGACCACCAGCGCCCCGCACAGGCTGATCACGATTGCCATGGGCACCGCACTGCCATCATGCAGTAGCCCGACCAGCGC < NC_002947/688338‑688195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |