New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1298272 =	NA (NA)	5 (0.110)	5/240	NT	NA	intergenic (+125/+304)	PP_1133/PP_1134	transposase/hypothetical protein
	?	NC_002947	1298318 =	NA (NA)					intergenic (+171/+258)	PP_1133/PP_1134	transposase/hypothetical protein

CCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1298424‑1298272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTC  >  NC_002947/1298318‑1298464                                                                                                                                                                                                                                                                                                              CCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGC                                                                                                                                                        <  1:642141/150‑1  CGACAGGGATTAACGCCGATGTCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCT                                                                                                                                                       <  2:906823/150‑1   GACAGGGATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTGGTAGTCTCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTT                                                                                                                                                      >  1:677507/1‑150   GACAGGGATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTT                                                                                                                                                      >  2:59355/1‑150    ACAGGGATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATCCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTT                                                                                                                                                     >  1:167606/1‑150    ACAGGGATTAACGCCGATGCCATTTGGGCCAACCCAGCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTT                                                                                                                                                     >  1:1188760/1‑150                                                   CAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGC                                                                                                                                                        >  2:994204/1‑100                                                   CAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGC                                                                                                                                                        <  1:994204/100‑1                                                                CAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTT                                                                                                                                                      >  2:793052/1‑89                                                                CAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTT                                                                                                                                                      <  1:793052/89‑1                                                                                                        TAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGAACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCC                                                 >  2:465710/1‑150                                                                                                             AAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTC                                            >  2:320643/1‑150                                                                                                                TATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGC                                         >  1:679881/1‑150                                                                                                                  TTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATACTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCAC                                       >  2:308546/1‑150                                                                                                                        GGCTGACCTACCCGGATCAGTCGGCGAATACTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTG                                 <  1:308546/150‑1                                                                                                                                                     GCTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACT    <  1:320643/150‑1                                                                                                                                                      CTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTT   <  1:1199597/150‑1                                                                                                                                                       TTTGCTATGGTTCCCAGTGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTC  >  1:1083131/1‑150                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTANACCGCACTGNTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACGCTTC  >  1:307912/1‑150                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTC  >  2:841147/1‑150                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTC  >  1:323949/1‑150                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTC  >  1:357900/1‑150                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCAAGCTGTGccgaca                      >  2:716002/1‑124                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCAAGCTGTGccgaca                      <  1:716002/130‑7                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCAAGCTGTGc                           >  1:835084/1‑124                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCAAGCTGTGc                           <  2:835084/125‑2                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGCAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGT                     >  1:80807/1‑131                                                                                                                                                       TTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGCAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGT                     <  2:80807/131‑1                                                                                                                                                                                                                                                                                                              CCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1298424‑1298272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAGTGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTC  >  NC_002947/1298318‑1298464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.