| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1419553 = | 12 (0.270) | 6 (0.180) | 5/184 | NT | 41.5% | intergenic (‑36/+101) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 1419647 = | 8 (0.240) | intergenic (‑130/+7) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
GGCTGGTCGAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1419727‑1419553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGT > NC_002947/1419647‑1419795 GGCTGGTCGAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGG < 2:522707/150‑1 TGGTCGAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAG < 1:1078483/150‑1 GAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGC < 1:348713/150‑1 GTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCACGCCCGC > 2:505298/1‑150 GATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCACGCCCGCtcc < 1:505298/150‑4 TGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTAC < 1:1120144/123‑1 TGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTAC > 2:1120144/1‑123 TTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAG > 1:653648/1‑129 TTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAG < 2:653648/129‑1 TCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGC < 1:529778/96‑1 TCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGC > 2:529778/1‑96 GTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGT > 1:481149/1‑83 GTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGT < 2:481149/83‑1 GCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGA < 1:576771/77‑1 GCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGA > 2:576771/1‑77 ACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGAC > 2:81260/1‑150 TCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCT > 1:661486/1‑122 TCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCT < 2:661486/122‑1 CCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGTCTGTCGTGCTCCTGCATTGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGAAGACTGGACCAGCC > 1:85358/1‑150 CCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAACTGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCC > 1:68237/1‑150 TCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCA < 1:81260/150‑1 CGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCT > 2:1007745/1‑142 CGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCT < 1:1007745/142‑1 GAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGG > 2:1030625/1‑150 GAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGG < 1:857645/150‑1 CTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGT < 1:795518/150‑1 GGCTGGTCGAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1419727‑1419553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGT > NC_002947/1419647‑1419795 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |