New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1522029 =	48 (1.060)	4 (0.090)	4/240	NT	7.7%	coding (1244/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	1522072 =	50 (1.140)					coding (1287/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase

CGCTGATCAGCGGCGACGGGTAGGGTTTGAAGATGCCGAAGATCATGCAAGACCTCCCGCTGCCTGGGCGAACAGGCGTCCCCGTTCCTCGAAGTTCTTGAACATGTCGAGGCTGGCGCATGCTGGCGACAGCAGCACGGCATCGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1522180‑1522029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctCGACATGTTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACCCGTCGCCGCTGATCAGCGGCCGTGGCATCGACCTGGACTTCCCGA  >  NC_002947/1522072‑1522207                                                                                                                                                                                                                                                                                                  CGCTGATCAGCGGCGACGGGTAGGGTTTGAAGATGCCGAAGATCATGCAAGACCTCCCGCTGCCTGGGCGAACAGGCGTCCCCGTTCCTCGAAGTTCTTGAACATGTCGAGGCTGGCGCATGCTGGCGACAGCAGCACGGCATCGCCGGC                                                                                                                                            <  2:791269/150‑1  GCTGATCAGCGGCGACGGGTAGGGTTTGAAGATGCCGAAGATCATGCAAGACCTCCCGCTGCCTGGGCGAACAGGCGTCCCCGTTCCTCGAAGTTCTTGAACATGTCGAGGCTGGCGCATGCTGGCGACAGCAGCACGGCATCGCCGGCC                                                                                                                                           >  2:146152/1‑150                                                                                                        ATGTCGAGGCTGGCGCATGCTGGCGACAGCAGCACGGCATCGCCGGCCTCGACATGTTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACCCGTCGCCGCT                                     >  2:904408/1‑150                                                                                                                GCTGGCGCACGCTGGCGACAGCAGCACGGCATCGCCGGCCTCGACATGTTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACC                                               >  1:382612/1‑132                                                                                                                GCTGGCGCACGCTGGCGACAGCAGCACGGCATCGCCGGCCTCGACATGTTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACC                                               <  2:382612/132‑1                                                                                                                  TGGCGCATGCTGGCGACAGCAGCACGGCATCGCCGGCCTCGACATGGTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACCCGTCGCCGCTGATCAGCGGC                           >  1:26446/1‑150                                                                                                                                                        TCGACATGTTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACCCGTCGCCGCTGATCAGCGGCCGTGGCATCGACCTGGACTTCCCGA  >  1:773293/1‑137                                                                                                                                                        TCGACATGTTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACCCGTCGCCGCTGATCAGCGGCCGTGGCATCGACCTGGACTTCCCGA  <  2:773293/137‑1                                                                                                                                                                                                                                                                                                  CGCTGATCAGCGGCGACGGGTAGGGTTTGAAGATGCCGAAGATCATGCAAGACCTCCCGCTGCCTGGGCGAACAGGCGTCCCCGTTCCTCGAAGTTCTTGAACATGTCGAGGCTGGCGCATGCTGGCGACAGCAGCACGGCATCGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1522180‑1522029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctCGACATGTTCAAGAACTTCGAGGAACGGGGACGCCTGTTCGCCCAGGCAGCGGGAGGTCTTGCATGATCTTCGGCATCTTCAAACCCTACCCGTCGCCGCTGATCAGCGGCCGTGGCATCGACCTGGACTTCCCGA  >  NC_002947/1522072‑1522207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.