New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1584371 =	58 (1.290)	6 (0.140)	6/242	NT	9.8%	coding (685/1452 nt)	PP_1388	EmrB/QacA family drug resistance transporter
	?	NC_002947	1584400 =	54 (1.230)					coding (656/1452 nt)	PP_1388	EmrB/QacA family drug resistance transporter

GTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGTTGATTCTCGGCCTTGGCAGCCTGCTGCTGGGCATCACCTTGGTGGGCCAGGGCCACGCCTGGGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1584475‑1584371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCA  >  NC_002947/1584400‑1584474                                                                                                                                                                                      GTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGTTGATTCTCGGCCTTGGCAGCCTGCTGCTGGGCATCACCTTGGTCGGCCCAGGCGTGGCCCTGGCCCACCAAGGTGATGCCCAGC                                                              >  1:407492/1‑120 GTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGTTGATTCTCGGCCTTGGCAGCCTGCTGCTGGGCATCACCTTGGTCGGCCCAGGCGTGGCCCTGGCCCACCAAGGTGATGCCCAGC                                                              <  2:407492/120‑1                                                                         CCTTGGTGGGCCAGGGCCACGCCTGGGCCGACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCA  >  1:189256/1‑108                                                                         CCTTGGTGGGCCAGGGCCACGCCTGGGCCGACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCA  <  2:189256/108‑1                                                                          CTTGGTGGGCCAGGGCCACGCCTGGGCCCACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGC                                              >  1:168726/1‑63                                                                          CTTGGTGGGCCAGGGCCACGCCTGGGCCCACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGC                                              <  2:168726/63‑1                                                                                                                                                                                      GTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGTTGATTCTCGGCCTTGGCAGCCTGCTGCTGGGCATCACCTTGGTGGGCCAGGGCCACGCCTGGGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1584475‑1584371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCA  >  NC_002947/1584400‑1584474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.