New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1965064 =	58 (1.290)	4 (0.090)	4/238	NT	7.3%	coding (1233/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase
	?	NC_002947	1965122 =	46 (1.060)					coding (1291/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase

CAGCACCGCGCAGATGTGCCGCAGCAACTCATCGCCGGCAGCGTGGCCACAGGTGTCGTTGACCAGCTTGAACTGGTCGAGGTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1965217‑1965064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATGAATT  >  NC_002947/1965122‑1965270                                                                                                                                                                                                                                                                                                                 CAGCACCGCGCAGATGTGCCGCAGCAACTCATCGCCGGCAGCGTGGCCACAGGTGTCGTTGACCAGCTTGAACTGGTCGAGGTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTA                                                                                                                                                           <  1:308414/150‑1  AGCACCGCGCAGATGTGCCGCAGCAACTCATCGCCGGCAGCGTGGCCACAGGTGTCGTTGACCAGCTTGAACTGGTCGAGGTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTAT                                                                                                                                                          >  2:15470/1‑150  AGCACCGCGCAGATGTGCCGCAGCAACTCATCGCCGGCAGCGTGGCCACAGGTGTCGTTGACCAGCTTGAACTGGTCGAGGTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTAT                                                                                                                                                          <  2:49854/150‑1                                                                                                   AATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGC                                                         >  2:903393/1‑150                                                                                                     TGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTG                                                       >  1:57538/1‑150                                                                                                     TGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTG                                                       <  2:57538/150‑1                                                                                                                       GCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAG                                     <  2:419549/150‑1                                                                                                                                                      atgCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG      >  1:1206352/4‑150                                                                                                                                                      ATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG      <  1:195276/150‑1                                                                                                                                                      ATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG      >  1:857731/1‑150                                                                                                                                                          GCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATGAATT  >  1:189738/1‑150                                                                                                                                                                                                                                                                                                                 CAGCACCGCGCAGATGTGCCGCAGCAACTCATCGCCGGCAGCGTGGCCACAGGTGTCGTTGACCAGCTTGAACTGGTCGAGGTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1965217‑1965064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATGAATT  >  NC_002947/1965122‑1965270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.