New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2273408	55 (1.220)	3 (0.070)	3/240	NT	5.3%	coding (1002/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	= 2273450	55 (1.260)					coding (960/1041 nt)	PP_2004	AraC family transcriptional regulator

ACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2273306‑2273408 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGAGTTCCGCCGCAGCCAGCGGCAGCCGAGCTAGAGTTCGGTGGCGTCGTCGGCCGGTTCCGGGGTGTCCAGTTCGTAAGCCTGGGTTTCGAGTAGTTCT  <  NC_002947/2273450‑2273303                                                                                                                                                                                                                                                             ACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGG                                                                                                       <  2:172120/150‑1                                                               TCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGA                                                                                                   <  1:529139/92‑1                                                               TCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGA                                                                                                   >  2:529139/1‑92                                                                                                      GCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGAGTTCCGCCGCAGCCAGCGGCAGCCGAGCTAGAGTTCGGTGGCGTCGTCGGCCGGTTCCGGGGTGTCCAGTTCGTAAGCCTGGGTTTCGAGTAGTTCT  <  1:739313/150‑1                                                                                                      GCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGAGTTCCGCCGCAGCCAGCGGCAGCCGAGCTAGAGTTCGGTGGCGTCGTCGGCCGGTTCCGGGGTGTCCAGTTCGTAAGCCTGGGTTTCGAGTAGTTCT  <  2:142666/150‑1                                                                                                                                                                                                                                                             ACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2273306‑2273408 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGAGTTCCGCCGCAGCCAGCGGCAGCCGAGCTAGAGTTCGGTGGCGTCGTCGGCCGGTTCCGGGGTGTCCAGTTCGTAAGCCTGGGTTTCGAGTAGTTCT  <  NC_002947/2273450‑2273303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.