| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4131154 | 43 (0.950) | 12 (0.290) | 12/228 | NT | 23.2% | intergenic (+22/+90) | PP_3634/PP_3635 | GNAT family acetyltransferase/sulfonate ABC transporter permease |
| ? | NC_002947 | = 4131216 | 40 (0.960) | intergenic (+84/+28) | PP_3634/PP_3635 | GNAT family acetyltransferase/sulfonate ABC transporter permease | |||||
GATTCACACCTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4131000‑4131154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggctCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCGCGAACAGGCCATCGGATCAATGCACGTTCTTGCGCTGGCGCACACATTCCTGGGCTTGAGCGGTCAGCTCATCCAGCCG < NC_002947/4131216‑4131070 GATTCACACCTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGC > 1:288452/1‑150GATTCACACCTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGC < 2:119455/150‑1 TCACACCTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGG < 2:52203/150‑1 CTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCC > 2:1087746/1‑150 GAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACG > 2:1007110/1‑150 GATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCGTTGCGGTATTCCTGTG < 2:411922/150‑1 GCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGC < 1:1007110/150‑1 GGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGTGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCG < 2:75757/148‑1 GGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGTGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCG > 1:75757/1‑148 GATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGG > 1:453831/1‑76 GATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGG < 2:453831/76‑1 AGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCGCGAACAG < 1:1087746/150‑1 AAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGT > 1:460075/1‑114 AAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGT < 2:460075/114‑1 GCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGC > 2:364881/1‑110 GCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGC < 1:364881/110‑1 GAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGG < 2:254542/94‑1 GAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGG > 1:254542/1‑94 GGGCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCGCGAACAGGCCATCGGATCAATGCACGTTCTTGCGCTGGCGCACACATTCCTGGGCTTGAGCGGTCAGCTCATCCAGC < 2:303986/150‑1 GCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCGCGAACAGGCCATCGGATCAATGCACGTTCTTGCGCTGGCGCACACATTCCTGGGCTTGAGCGGTCAGCTCATCCAGCCG > 2:1039113/1‑150 GCTCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCGCGAACAGGCCATCGGATCAATGCACGTTCTTGCGCTGGCGCACACATTCCTGGGCTTGAGCGGTCAGCTCATCCAGCCG > 1:567504/1‑150 GATTCACACCTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4131000‑4131154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggctCGCCCGCTCCCACAGGTACATCACCGGCCTTGGGCCTTACGGTATTCCTGTGGGCGCGGGCAAGCCCGCGAACAGGCCATCGGATCAATGCACGTTCTTGCGCTGGCGCACACATTCCTGGGCTTGAGCGGTCAGCTCATCCAGCCG < NC_002947/4131216‑4131070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |