New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4159142	42 (0.930)	4 (0.100)	3/216	NT	9.0%	intergenic (+46/‑163)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	= 4159170	44 (1.120)					intergenic (+74/‑135)	PP_3661/PP_3662	membrane protein/hypothetical protein

AGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4158983‑4159142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaggGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTGCACCCCCAGGGTAATCGCCAGCCCCCCGCCAACCAGCCACAGGTTGAGGATCGCA  <  NC_002947/4159170‑4159024                                                                                                                                                                                                                                                                                                                     AGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCG                                                                                                                                                               <  1:234828/150‑1  GCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGC                                                                                                                                                              >  2:4809/1‑150  GCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGC                                                                                                                                                              >  2:458945/1‑150    CAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTC                                                                                                                                                            <  2:1136026/150‑1    CAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGAGGGGGTCTGGCGATTACTTTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTC                                                                                                                                                            >  1:85376/1‑150          CGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAG                                                                                                                                                      <  1:1189463/150‑1            CCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGAACTGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGG                                                                                                                                                    >  1:734442/1‑150                                                 CTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAG                                                                                                               >  1:808384/1‑150                                                     ACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGG                                                                                                           <  2:808384/150‑1                                                                                 GATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGG                                                                                                           <  1:36779/122‑1                                                                                 GATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGG                                                                                                           >  2:36779/1‑122                                                                                                                                                 AACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTGCACCCCCAGGGTAATCGCCAGCCCCCCGCCAACCAGCCACAG               >  2:85376/1‑150                                                                                                                                                   CCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTG                                                         >  1:999806/1‑106                                                                                                                                                   CCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTG                                                         <  2:999806/106‑1                                                                                                                                                    CCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTGCACCCCCAGGGTAATCGCCAGCCCCCCGCCAACCAGCCACAGGTT            >  1:594914/1‑150                                                                                                                                                    CCGCTACTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTGCACCCCCAGGGTAATCGCCAGCCCCCCGCCAACCAGCCACAGGTT            >  1:458945/1‑150                                                                                                                                                          CTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCA                                                                                                                         <  2:16076/35‑1                                                                                                                                                          CTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCA                                                                                                                         >  1:16076/1‑35                                                                                                                                                              AGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTGCACCCCCAGGGTAATCGCCAGCCCCCCGCCAACCAGCCACAGGTTGAGGATCGCA  >  2:404517/1‑150                                                                                                                                                                                                                                                                                                                     AGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4158983‑4159142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaggGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCCAGTCAGCCCAACAGCTTCTGCACCCCCAGGGTAATCGCCAGCCCCCCGCCAACCAGCCACAGGTTGAGGATCGCA  <  NC_002947/4159170‑4159024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.