New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5047123 =	46 (1.020)	4 (0.090)	4/246	NT	7.3%	intergenic (+56/+392)	PP_5683/PP_5684	hypothetical protein/hypothetical protein
	?	NC_002947	5047158 =	56 (1.250)					intergenic (+91/+357)	PP_5683/PP_5684	hypothetical protein/hypothetical protein

GCGGAGCGCGCCGGCGTGACGGATGGAAGCCCGGAGGGCCGAGACGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5047172‑5047123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGCCGGCGCGCTCCGCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGA  >  NC_002947/5047158‑5047275                                                                                                                                                                          GCGGAGCGCGCCGGCGTGACGGATGGAAGCCCGGAGGGCCGAGACGTCGCGCCGGCGCGCTCCGCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCA                    >  2:362006/1‑150              GCGTGACGGATGGAAGCCCGGAGGGCCGAGACGTCGCGCCGGCGCGCTCCGCTTGCCTTTCGGAGTATCCATCAACTTCCAC                                                                           <  1:780655/82‑1              GCGTGACGGATGGAAGCCCGGAGGGCCGAGACGTCGCGCCGGCGCGCTCCGCTTGCCTTTCGGAGTATCCATCAACTTCCAC                                                                           >  2:780655/1‑82                   ACGGATGGAAGCCCGGAGGGCCGAGACGTCGCGCCGGCGCGCTCCGCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGA  <  1:362006/150‑1                                                                                                                                                                          GCGGAGCGCGCCGGCGTGACGGATGGAAGCCCGGAGGGCCGAGACGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5047172‑5047123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGCCGGCGCGCTCCGCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGA  >  NC_002947/5047158‑5047275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.