New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 516218574 (1.640)4 (0.090) 3/234 NT 5.3% coding (905/1245 nt) PP_4544 hypothetical protein
?NC_002947 = 5162199 73 (1.710)coding (919/1245 nt) PP_4544 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

GCGCCGGCCGACGTGCTCAAGCTCACCGTGGGTGCCAGCATCTATGGTTACGACAACGACAAGGAAGCAGCCATCCTGCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5162031‑5162185
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccatAGGCCGACAACGGAATGGCCAAGCCAGTGAAGTCGATCTGGCCAAAGCCTTCCACCAGATTGAACTCGTTGGTGGTGTTGCCGAACGACTGCAGGATGGCTGCTTCCTTGTCGTTGTCGTAACCATAGATGCTGGCACCCACGGTGA  <  NC_002947/5162199‑5162053
                                                                                                                                                                                                                                                                                                              
GCGCCGGCCGACGTGCTCAAGCTCACCGTGGGTGCCAGCATCTATGGTTACGACAACGACAAGGAAGCAGCCATCCTGCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTG                                                                                                                                                          >  1:602063/1‑150
  GCCGGCCGACGTGCTCAAGCTCACCGTGGGTGCCAGCATCTATGGTTACGACAACGACAAGGAAGCAGCCATCCTGCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGC                                                                                                                                                        <  2:299813/150‑1
     GGCCGACGTGCTCAAGCTCACCGTGGGTGCCAGCATCTATGGTTACGACAACGACAAGGAAGCAGCCATCCTGCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCAT                                                                                                                                                     <  2:344412/150‑1
     GGCCGACGTGCTCAAGCTCACCGTGGGTGCCAGCATCTATGGTTACGACAACGACAAGGAAGCAGCCATCCTGCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCAT                                                                                                                                                     <  2:934552/150‑1
                                                                                                  CAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATAGGCCGACAACGGAATGGCCAAGC                                                                                                                             >  1:1066743/1‑81
                                                                                                  CAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATAGGCCGACAACGGAATGGCCAAGC                                                                                                                             <  2:1066743/81‑1
                                                                                                  CAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATAGGCCGACAACGGAATGGCCAA                                                                                                                               >  1:1040432/1‑79
                                                                                                  CAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATAGGCCGACAACGGAATGGCCAA                                                                                                                               <  2:1040432/79‑1
                                                                                                                                                        CATAGGCCGACAACGGAATGGCCAAGCCAGTGAAGTCGATCTGGCCAAAGCCTTCCACCAGATTGAACTCGTTGGTGGTGTTGCCGAACGACTGCAGGATGGCTGCTTCCTTGTCGTTGTCGTAACCATAGATGCTGGCACCCACGGTGA  <  2:307396/150‑1
                                                                                                                                                                                                                                                                                                              
GCGCCGGCCGACGTGCTCAAGCTCACCGTGGGTGCCAGCATCTATGGTTACGACAACGACAAGGAAGCAGCCATCCTGCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5162031‑5162185
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccatAGGCCGACAACGGAATGGCCAAGCCAGTGAAGTCGATCTGGCCAAAGCCTTCCACCAGATTGAACTCGTTGGTGGTGTTGCCGAACGACTGCAGGATGGCTGCTTCCTTGTCGTTGTCGTAACCATAGATGCTGGCACCCACGGTGA  <  NC_002947/5162199‑5162053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.