| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5178251 | 59 (1.310) | 7 (0.160) | 6/240 | NT | 10.7% | coding (285/486 nt) | PP_4554 | hypothetical protein |
| ? | NC_002947 | = 5178264 | 60 (1.370) | coding (272/486 nt) | PP_4554 | hypothetical protein | |||||
TCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5178101‑5178251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgATGCCTTCGGCCCCGGTTGGGTACCGTCGGACAAGGCCTTCATGACCGCCGTGATCAGCTTTGACGAGGAACAGGGCAAAACCCGCTACACCGCCCGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTC < NC_002947/5178264‑5178116 TCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACC > 2:1062689/1‑150 CATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCGATGCCTTCGGCCCCGGTTGG < 1:40440/150‑1 GGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCGATGCCTTCGGCCCCGGTT > 1:902141/1‑137 GGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCGATGCCTTCGGCCCCGGTT < 2:902141/137‑1 CCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCGATGCCTTCGGCCCCGGTTG > 1:1134863/1‑81 CCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCGATGCCTTCGGCCCCGGTTG < 2:1134863/81‑1 TCATGAAGGCCTTGTCCGACGGTACCCAACCGATGCCTTCGGCCCCGGTTG > 1:717892/1‑51 TCATGAAGGCCTTGTCCGACGGTACCCAACCGATGCCTTCGGCCCCGGTTG < 2:717892/51‑1 ACCGATGCCTTCGGCCCCGGTTGGGTACCGTCGGACAAGGTCTTCATGACCGCCGTGATCAGCTTTGACGAGGAACAGGGCAAAACCCGCTACACCGCCCGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGC > 2:819673/1‑150 ACCGATGCCTTCGGCCCCGGTTGGGTACCGTCGGACAAGGCCTTCATGACCGCCGTGATCAGCTTTGACGAGGAACAGGGCAAAACCCGCTACACCGCCCGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGC < 2:809194/150‑1 GATGCCTTCGGCCCCGGTTGGGTACCGTCGGACAAGGCCTTCATGACCGCCGTGATCAGCTTTGACGAGGAACAGGGCAAAACCCGCTACACCGCCCGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTC > 1:996245/1‑150 TCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5178101‑5178251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgATGCCTTCGGCCCCGGTTGGGTACCGTCGGACAAGGCCTTCATGACCGCCGTGATCAGCTTTGACGAGGAACAGGGCAAAACCCGCTACACCGCCCGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTC < NC_002947/5178264‑5178116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |