| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5333224 = | 56 (1.240) | 4 (0.090) | 4/236 | NT | 7.1% | intergenic (+8/‑235) | gluQ/PP_5704 | glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein |
| ? | NC_002947 | 5333322 = | 51 (1.190) | intergenic (+106/‑137) | gluQ/PP_5704 | glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein | |||||
CGTTCGCCAAGGGTTTGAATTTACTGGGCTTTTGTTTTTAGGGGGGGTACCTGTGCCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5333376‑5333224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAG > NC_002947/5333322‑5333424 tgtctGCCAAGTGTTTGAATTTACTGGGCTTTTGTTTTTAGGGGGGGTACCTGTGCCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTAACCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGC < 2:1091480/145‑1 TCGCCAAGGGTTTGAATTTACTGGGCTTTGGTTTTTAGGGGGGGTACCAGTGCCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGG > 1:635901/1‑150 GTACCTGTGCCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAAC > 1:1198112/1‑150 CTGTGCCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGC < 1:152723/100‑1 CTGTGCCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGC > 2:152723/1‑100 CTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCC < 1:806955/90‑1 CTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCC > 2:806955/1‑90 ACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTA > 1:770026/1‑140 ACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTA < 2:770026/140‑1 CACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGC < 2:1198112/150‑1 CCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCT < 1:1183908/74‑1 CCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCT > 2:1183908/1‑74 GCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAG < 1:667211/104‑1 GCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAG > 2:667211/1‑104 CGTTCGCCAAGGGTTTGAATTTACTGGGCTTTTGTTTTTAGGGGGGGTACCTGTGCCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5333376‑5333224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAG > NC_002947/5333322‑5333424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |