New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5389439	73 (1.630)	4 (0.100) +GTTGCCGCCGCCACCGTA	3/210	NT	7.2%	intergenic (+90/‑230)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein
	?	NC_002947	= 5460701	47 (1.040)					intergenic (+34/‑183)	holA/PP_4797	DNA polymerase III subunit delta/hypothetical protein

TGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5389374‑5389439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCGGGTAAACCCGCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAG  <  NC_002947/5460701‑5460626                                                                   ||||||||||||||||||                                                                             gtCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGACCTGCTAATCAATCTCCACCCACCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAG            >  2:374439/3‑150           CGGGTTTACCCGCGAAGAGGCCGGACCTGCTAATCAATCTCCACCCACCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAG  <  1:374439/150‑1              GTTTACCCGCGAAGAGGCCGGACCTGCTAATCAATCTCCACCCACCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCAT        >  1:527735/1‑141              GTTTACCCGCGAAGAGGCCGGACCTGCTAATCAATCTCCACCCACCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCAT        <  2:527735/141‑1                                                                   ||||||||||||||||||                                                                             TGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5389374‑5389439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCGGGTAAACCCGCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAG  <  NC_002947/5460701‑5460626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.