New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5455677 =	46 (1.020)	9 (0.220)	9/222	NT	18.0%	intergenic (‑37/+98)	PP_4792/PP_4793	hypothetical protein/hypothetical protein
	?	NC_002947	5455715 =	41 (1.010)					intergenic (‑75/+60)	PP_4792/PP_4793	hypothetical protein/hypothetical protein

GGCTCAAGGACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5455836‑5455677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcgtcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGGC  >  NC_002947/5455715‑5455859                                                                                                                                                                                                                                                                                                                   GGCTCAAGGACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACC                                                                                                                                                             >  2:1159973/1‑150          ACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGAT                                                                                                                                                    <  2:843941/150‑1                          CAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATA                                                                                                                                    <  2:67474/150‑1                                                                                                                     ACTCAAGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGT                                         <  1:67474/150‑1                                                                                                                           GATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCCTGAGTTGTGTGATAGTGGAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGC                                                <  1:209138/137‑1                                                                                                                           GATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCCTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGC                                                >  2:209138/1‑137                                                                                                                               GACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGG                                              <  1:1007697/135‑1                                                                                                                               GACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGG                                              >  2:1007697/1‑135                                                                                                                                  GCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGA                            >  2:402680/1‑150                                                                                                                                    CGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGG                                                                                                   <  1:1035132/77‑1                                                                                                                                    CGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGG                                                                                                   >  2:1035132/1‑77                                                                                                                                                           TCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGAT        <  1:286465/145‑1                                                                                                                                                           TCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGAT                     <  1:376524/132‑1                                                                                                                                                           TCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGAT                     >  2:376524/1‑132                                                                                                                                                           TCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGACGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGAT        >  2:286465/1‑145                                                                                                                                                            CGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGGC  <  1:924973/150‑1                                                                                                                                                                                                                                                                                                                   GGCTCAAGGACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5455836‑5455677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcgtcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGGC  >  NC_002947/5455715‑5455859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.