New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5774119	59 (1.310)	4 (0.090)	4/236	NT	6.7%	coding (626/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	= 5774150	55 (1.280)					coding (657/657 nt)	betI	choline‑responsive transcriptional repressor BetI

GCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5773965‑5774119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACC  <  NC_002947/5774150‑5774007                                                                                                                                                                                                                                                                                                             GCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACCACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT                                                                                                                                                       <  2:45216/150‑1        TGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT                                                                                                                                                       >  1:427999/1‑143        TGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT                                                                                                                                                       <  2:427999/143‑1                                                  CATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATT                                                                                                           >  1:156715/1‑145                                                  CATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATT                                                                                                           <  2:156715/145‑1                                                                                                               GCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTT                                                                                                                                <  1:90232/63‑1                                                                                                               GCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTT                                                                                                                                >  2:90232/1‑63                                                                                                                                                      TGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACC  <  2:621704/150‑1                                                                                                                                                           GTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCA    >  1:186755/1‑143                                                                                                                                                           GTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCA    <  2:186755/143‑1                                                                                                                                                                                                                                                                                                             GCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5773965‑5774119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACC  <  NC_002947/5774150‑5774007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.