New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5786526 =	45 (1.000)	10 (0.220)	5/246	NT	17.8%	intergenic (+13/‑118)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5786615 =	48 (1.070)					intergenic (+102/‑29)	PP_5068/trxC	hypothetical protein/thioredoxin

GGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5786620‑5786526 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGAGCACC  >  NC_002947/5786615‑5786763                                                                                                                                                                                                                                                      GGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTt                                                                                                >  1:76191/1‑149                         CCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAA                                                                           <  1:554792/147‑1                         CCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAA                                                                           >  2:554792/1‑147                         CCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCG                                                                        >  2:1089444/1‑150                         CCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGAACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACC                                                                                                                    >  1:356382/1‑106                         CCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGAACGCCCGCTCCCACAAGGAAACCGTGAACCCAACAACGGAGATGAAATGACC                                                                                                                    <  2:356382/106‑1                          CCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACC                                                                                                                    >  1:807791/1‑105                          CCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACC                                                                                                                    <  2:807791/105‑1                          CCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTCGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAAACCGTGAACCCAACACCGGAGATGAACTAACCGACCCACTGGGAATCCCCTGCCCCCACTGCAACGGCCACAGCCGC                                                                       >  2:517677/1‑150                                              GGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCCACCGCCTTCCCGCCGAGCGCCTGGG                                                   <  1:517677/150‑1                                                                                               GGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGAGCACC  >  1:555968/1‑150                                                                                                                                                                                                                                                      GGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5786620‑5786526 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGAGCACC  >  NC_002947/5786615‑5786763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.