New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5992126	67 (1.480)	3 (0.070)	3/238	NT	4.6%	coding (61/1263 nt)	opdB	proline‑specific outer membrane porin D
	?	NC_002947	= 5992147	61 (1.410)					coding (82/1263 nt)	opdB	proline‑specific outer membrane porin D
Rejected: Frequency below/above cutoff threshold.

CGGCACAGGTAAACCGCTCCCCCAGCACACCCTTACAAGACCCCTGGCCTATCCTTGCTCCACAGTCCCGGATCATCCCCCGGAGCTCCCCATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5991975‑5992126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGCGCTTCGGCGTGGCTCAGCGCCGGCCAGAGGGCG  <  NC_002947/5992147‑5992113                                                                                                                                                                                             CGGCTCAGGTAAACCGCTCCCCCAGCACACCCTTACAAGACCCCTGGCCTATCCTTGCTCCACAGTCCCGGATCATCCCCCGGAGCTCCCCATGATCCGCGCCACACACTGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGGCC                                       <  2:168243/150‑1                                     AAGACCCCTGGCCTATCCTTGCTCCACAGTCCCGGATCATCCCCCGGAGCTCCCCATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGGCAGG                                     <  1:848339/116‑1                                     AAGACCCCTGGCCTATCCTTGCTCCACAGTCCCGGATCATCCCCCGGAGCTCCCCATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGGCAGG                                     >  2:848339/1‑116                                      AGACCCCTGGCCTATCCTTGCTCCACAGTCCCGGATCATCCCCCGGAGCTCCCCATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGACCGGGCGCTTCGGCGTGGCTCAGCGCCGGCCAGAGGGCG  <  2:1085958/150‑1                                                                                           CATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGGCCGGGCGCTTCGGCGTGGCTCAGCGCC              >  1:990230/1‑85                                                                                           CATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGGCCGGGCGCTTCGGCGTGGCTCAGCGCC              <  2:990230/85‑1                                                                                                                                                                                             CGGCACAGGTAAACCGCTCCCCCAGCACACCCTTACAAGACCCCTGGCCTATCCTTGCTCCACAGTCCCGGATCATCCCCCGGAGCTCCCCATGATCCGCGCCACACACGGACCAGGCCGCGCCCTGCTCGCCACCCTCGCCCTCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5991975‑5992126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGCGCTTCGGCGTGGCTCAGCGCCGGCCAGAGGGCG  <  NC_002947/5992147‑5992113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.