New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6133946 =	49 (1.090)	4 (0.090)	4/234	NT	8.2%	intergenic (‑38/‑158)	copA‑II/PP_5381	copper resistance protein A/hypothetical protein
	?	NC_002947	6133971 =	43 (1.010)					intergenic (‑63/‑133)	copA‑II/PP_5381	copper resistance protein A/hypothetical protein

CAAGGAAGCCGGGCCTGCGATCGAGCGGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6133978‑6133946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccggCTTCCTTGGGGATCCCACAAGTCTTAGGGACTTGCTCGAAAGCGCAAGTCACAGTGGGAGAAAGCGATTTGAAACTGCCACATAAAAGATTCCCGAGTGATTACATTTCTGTAAGCTCGGATCAGCAGTTCTCATGCTGCCCGTGTTTA  >  NC_002947/6133971‑6134119                                                                                                                                                                                        CAAGGAAGCCGGGCCTGCGATCGAGCGGCCCGGCTTCCTTGGGGATCCCACAAGTCTTAGGGACTTGCTCGAAAGCGCAAGTCACAGTGGGAGAAAGCGATTTGAAACTGCCACATAAAAGATTCC                                                          <  1:354666/126‑1 CAAGGAAGCCGGGCCTGCGATCGAGCGGCCCGGCTTCCTTGGGGATCCCACAAGTCTTAGGGACTTGCTCGAAAGCGCAAGTCACAGTGGGAGAAAGCGATTTGAAACTGCCACATAAAAGATTCC                                                          >  2:354666/1‑126       AGCCGGGCCTGCGATCGAGCGGCCCGGCTTCCTTGGGGATCCCACAAGTCTTAGGGACTTGCTCGAAAGCGCAAGTCACAGTGGGAGAAAG                                                                                       <  2:269967/91‑1       AGCCGGGCCTGCGATCGAGCGGCCCGGCTTCCTTGGGGATCCCACAAGTCTTAGGGACTTGCTCGAAAGCGCAAGACACAGTGGGAGAAAG                                                                                       >  1:269967/1‑91                                 GCTTCCTTGGGGATCCCACAAGTCTTAGGGAATTACTCGAAAGCGCAAGTCACAGTGGGAGAAAGCGATTTGAAACTGCCACATAAAAGATTCCCGAGTGATTACATTTCTGTAAGCTCGGATCAGCAGTTCTCATGCTGCCCGTGTTTA  <  2:584954/150‑1                                                                                                                                                                                        CAAGGAAGCCGGGCCTGCGATCGAGCGGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6133978‑6133946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccggCTTCCTTGGGGATCCCACAAGTCTTAGGGACTTGCTCGAAAGCGCAAGTCACAGTGGGAGAAAGCGATTTGAAACTGCCACATAAAAGATTCCCGAGTGATTACATTTCTGTAAGCTCGGATCAGCAGTTCTCATGCTGCCCGTGTTTA  >  NC_002947/6133971‑6134119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.